View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15696_low_4 (Length: 662)
Name: NF15696_low_4
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 611; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 20 - 650
Target Start/End: Complemental strand, 42224516 - 42223886
Alignment:
| Q |
20 |
ctaacctctccaacctcacttaccttcattcacttgacctttccaataacactttccatggccaaattccattccaattttctcatctctcactcctcaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224516 |
ctaacctctccaacctcacttaccttcattcacttgacctttccaataacacttttcatggccaaattccattccaattttctcatctctcactcctcaa |
42224417 |
T |
|
| Q |
120 |
tgtcattcaattagctatgaacgatctcaatggtacacttccaccacaattgggtcaactccataatctacagagtttagacttttctgtcaataatctc |
219 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224416 |
tgtcattcaattagctatgaacgatctcaatggcacacttccaccacaattgggtcaactccataatctacagagtttagacttttctgtcaataatctc |
42224317 |
T |
|
| Q |
220 |
actggtaaaattccttcaacctttggcaatctcttatctctcaagaatctttccatggcaaggaacatgcttgagggtgaaattccaagtgaattgggca |
319 |
Q |
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|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224316 |
acaggtcaaattccttcaacctttggcaatctcttatctctcaagaatctttccatggcaaggaacatgcttgagggtgaaattccaagtgaattgggca |
42224217 |
T |
|
| Q |
320 |
atctccacaatctttcaagacttcaactctcagagaataacttcaccggcaagcttcctacttctatcttcaacttatcttccttagttttcttatccct |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224216 |
atctccacaatctttcaagacttcaactctcagagaataacttcaccggcaagcttcctacttctatcttcaacttatcttccttagttttcttatccct |
42224117 |
T |
|
| Q |
420 |
cacacagaacaatctatcaggcgagttgccacaaaatttcggcgaagcttttccgaatatagggacacttgctttggcaaccaatagatttgaaggggta |
519 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224116 |
cacacagaacaatctatcaggcgagttgccacaaaatttcggcgaagcttttccgaatatagggacacttgctttggcaaccaatagatttgaaggggta |
42224017 |
T |
|
| Q |
520 |
attcctagttccatatccaattcatcacatcttcaaattattgatctttctaacaataggtttcatgggccaatgcctcttttcaacaacttgaaaaacc |
619 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224016 |
atccctagttccatatccaattcatcacatcttcaaattattgatctttctaacaataggtttcatgggccaatgcctcttttcaacaacttgaaaaacc |
42223917 |
T |
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| Q |
620 |
tcactcatttgtatctcagtaagaataatct |
650 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
42223916 |
tcactcatttgtatctcagtaagaataatct |
42223886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 20 - 630
Target Start/End: Complemental strand, 42212300 - 42211690
Alignment:
| Q |
20 |
ctaacctctccaacctcacttaccttcattcacttgacctttccaataacactttccatggccaaattccattccaattttctcatctctcactcctcaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212300 |
ctaacctctccaacctcacttaccttcattcacttgacctttccaataacacttttcatggccaaattccattccaattttctcatctctcactcctcaa |
42212201 |
T |
|
| Q |
120 |
tgtcattcaattagctatgaacgatctcaatggtacacttccaccacaattgggtcaactccataatctacagagtttagacttttctgtcaataatctc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42212200 |
tgtcattcaattagctatgaacgatctcaatggcacacttccaccacaattgggtcaactccataatctacaaagtttagacttttctgtcaataatctc |
42212101 |
T |
|
| Q |
220 |
actggtaaaattccttcaacctttggcaatctcttatctctcaagaatctttccatggcaaggaacatgcttgagggtgaaattccaagtgaattgggca |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212100 |
actggtaaaattccttcaacctttggcaatctcttatctctcaagaatctttccatggcaaggaacatgcttgagggtgaaattccaagtgaattgggca |
42212001 |
T |
|
| Q |
320 |
atctccacaatctttcaagacttcaactctcagagaataacttcaccggcaagcttcctacttctatcttcaacttatcttccttagttttcttatccct |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212000 |
atctccacaatctttcaagacttcaactctcagagaataacttcaccggcaagcttcctacttctatcttcaacttatcttccttagttttcttatccct |
42211901 |
T |
|
| Q |
420 |
cacacagaacaatctatcaggcgagttgccacaaaatttcggcgaagcttttccgaatatagggacacttgctttggcaaccaatagatttgaaggggta |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42211900 |
cacacagaacaatctatcaggcgagttgccacaaaatttcggcgaagcttttccgaatatagggacacttgctttggcaaccaatagatttgaaggggta |
42211801 |
T |
|
| Q |
520 |
attcctagttccatatccaattcatcacatcttcaaattattgatctttctaacaataggtttcatgggccaatgcctcttttcaacaacttgaaaaacc |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42211800 |
attcctagttccatatccaattcatcacatcttcaaattattgatctttctaacaataggtttcatgggccaatgcctcttttcaacaacttgaaaaacc |
42211701 |
T |
|
| Q |
620 |
tcactcatttg |
630 |
Q |
| |
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||||||||||| |
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|
| T |
42211700 |
tcactcatttg |
42211690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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