View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15696_low_5 (Length: 511)
Name: NF15696_low_5
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 11 - 490
Target Start/End: Original strand, 43985121 - 43985600
Alignment:
| Q |
11 |
agcaaaggcataagtgtaacatccttagcaagaacaccagcaacatccacaccaccattaacacatagagacaacaatatcgaaacacaatgttcctttg |
110 |
Q |
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| T |
43985121 |
agcaaaggcataagtgtaacatccttagcaagaacaccagcaacatcaacaccaccattaacacatagagacaacaatatcgaaacacaatgttcctttg |
43985220 |
T |
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| Q |
111 |
cagcacgcgaaggagcagatcgcaacagcccagcaatcaacggcaatgcagaagcttccaaaacagcattagctccatcaaaattctcagcaagtgccgc |
210 |
Q |
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| T |
43985221 |
cagcacgcgaaggagcagatcgcaacagcccagtaatcaacggcaatgcagaagcttccaaaacagcattagctccatcaaaattctcagcaagtgccgc |
43985320 |
T |
|
| Q |
211 |
aagaacagccaaagtttcagtaacaagctcttccttgttgcacaaggtattcaaaatagaaacaagcgcgtgaacagcaccggcttcaagcacacgttga |
310 |
Q |
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| T |
43985321 |
aagaacagccagagtttcagtaacaagctcttccttgttgcacaaggtattcaaaatagaaacaagcgcgtgaacagcaccggcttcaagcacacgttga |
43985420 |
T |
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| Q |
311 |
tgattcctaggaagcaaaagaagtccaaaaatggcaaccactgcattctttttcccgcaggttgttccttctttagccaattcaactaaaccatgaatca |
410 |
Q |
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| T |
43985421 |
tgattcctaggaagcaaaagaagtccaaaaatcgcaaccactgcattcttttttccgcaggttgttccttctttagccaattcaactaaaccatgaatca |
43985520 |
T |
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| Q |
411 |
catcttgattttcacctattaattttctatattctttcactgaacaaagatagaatattatagcagctgcaatttgacgg |
490 |
Q |
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| T |
43985521 |
catcttgattttcacctattaattttctatattctttcactgaacaaagatagaatattatagctgctgcaatttgacgg |
43985600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 482
Target Start/End: Original strand, 35205835 - 35205899
Alignment:
| Q |
418 |
attttcacctattaattttctatattctttcactgaacaaagatagaatattatagcagctgcaa |
482 |
Q |
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|||||| |||||||||||||| || |||||||||||| || || ||||||||| ||||||||| |
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| T |
35205835 |
attttcgcctattaattttctgtactctttcactgaagtgaggtaaaatattataccagctgcaa |
35205899 |
T |
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