View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15696_low_6 (Length: 479)
Name: NF15696_low_6
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 23 - 362
Target Start/End: Complemental strand, 28828165 - 28827827
Alignment:
| Q |
23 |
gggcataatggtaaaaacattggagcaatgaagatggtgggaaattgtggtggtggtgatagcaattttgtgaatagcatgaaactgtgcagtaactgtg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28828165 |
gggcataatggtaaaaacattggagcaatgaagatggtgggaaattgtggtggtggtgatagcaattttgtgaatagcatgaaactgtgcagtaactgtg |
28828066 |
T |
|
| Q |
123 |
ggaaagatgaatcatgtgtgttgattttaccttgtagacatctttgtttatgtgctgtttgtgggtcttctcttcacatttgtcctatttgtaaatcttt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28828065 |
ggaaagatgaatcatgtgtgttgattttaccttgtagacatctttgtttatgtgctgtttgtgggtcttctcttcacatttgtcctatttgtaaatcttt |
28827966 |
T |
|
| Q |
223 |
caaaactgctagtatccatgttaacatgtcatgaacatggatgaatttacctttaggtagtttcttagagaaagaaaagtaaaattacttgatgatggaa |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||| |
|
|
| T |
28827965 |
caaaactgctagtatccatgttaacatgtcatgaacatggatgaatttacctttaggtagtttcttagagaaagaaaa--aaatttacttcatgatggaa |
28827868 |
T |
|
| Q |
323 |
tggt-nnnnnnnntcattttgatcctaaatctcttgttcaa |
362 |
Q |
| |
|
|||| || ||||||||||||||||||||||||| |
|
|
| T |
28827867 |
tggtaaaaaaaaatcgttttgatcctaaatctcttgttcaa |
28827827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University