View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15696_low_8 (Length: 467)
Name: NF15696_low_8
Description: NF15696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15696_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 450
Target Start/End: Complemental strand, 39777493 - 39777064
Alignment:
| Q |
10 |
acatcatcaacagcatcactagattctgaaatgagcttccttatgtatccacttttggaaattaatggaaactgcaaattacgttagagttatgaaaaat |
109 |
Q |
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| T |
39777493 |
acatcatcaacagcatcactagattctgaaatgagcttccttatgtatccactttttgaaattaatggaaactgcaaattacgttagagttatgaaaaat |
39777394 |
T |
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| Q |
110 |
aattcaataaacagcttaaagtactatgtctatacatatatcacttatattttcctattactattcttgatnnnnnnnnnnnnnnnnnnntactaagaat |
209 |
Q |
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| T |
39777393 |
aattcaataaacagcttaaagtactatgtctatacatatatcacttatattttcctattactattcttgataaaaaaagaaaaaagaaaatactaagaat |
39777294 |
T |
|
| Q |
210 |
tgcatgaacaaccaatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcatnnnnnnngcaaagaattgattgaaaaaacagaacca |
309 |
Q |
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| T |
39777293 |
tgcatgaacaaccaatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcataaaaaaagcaaagaattgattgaaaaaacagaacca |
39777194 |
T |
|
| Q |
310 |
agtactagaattcattactctccatttaatgatcctatgattagtaagtttgatgtttgagtttgttgactaccttgtgtaacgaataggaagcttcgcc |
409 |
Q |
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| T |
39777193 |
agtactagaattcattactctccattta-----------gttagtaagtttgatatttgagtttgttgactaccttgtgtaacgaataggaagcttcgcc |
39777105 |
T |
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| Q |
410 |
aatttgaatagcgacatcacttggaatctcctgggagtaat |
450 |
Q |
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| T |
39777104 |
aatttgaatagcgacatcacttggaatctcctgggagtaat |
39777064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 1381263 - 1381228
Alignment:
| Q |
238 |
ctaaatagatcaaacgacatcataatgttgtatcat |
273 |
Q |
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| T |
1381263 |
ctaaatagatcaaacgacatcataatgttatatcat |
1381228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 219 - 415
Target Start/End: Original strand, 47798862 - 47799058
Alignment:
| Q |
219 |
aaccaatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcatnnnnnnngcaaagaattgattgaaaaaacagaaccaagtactaga |
318 |
Q |
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|||| ||||| ||||||||||| ||||||||||| ||||||||||||| ||||| | ||| ||||||||||||||||| |||||| |||||| |
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| T |
47798862 |
aacctatatgtggagtcaactacatagatcaaaccacatcataatgttctatcaacaaaggtggaaataattgattgaaaaaacattaccaaggactaga |
47798961 |
T |
|
| Q |
319 |
attcattactctccatttaatgatcctatgattagtaagtttgatgtttgagtttgttgactaccttgtgtaacgaataggaagcttcgccaatttg |
415 |
Q |
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| T |
47798962 |
aatcattactctccatttaatgatattatgattagtaattttgatatttgaatttgttccctaccttgtgtaacgaataggaagcttcaccaatttg |
47799058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 47798650 - 47798759
Alignment:
| Q |
10 |
acatcatcaacagcatcactagattctgaaatgagcttccttatgtatccacttttggaaattaatggaaactgcaaattacgttagagttatgaaaaat |
109 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47798650 |
acatcagcaacagcattactagattctgaaatgagcttccttatgtgtccacttttggaaattaatggaaactgcaaattacattagagttatgaaaaat |
47798749 |
T |
|
| Q |
110 |
aattcaataa |
119 |
Q |
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|||||||||| |
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| T |
47798750 |
aattcaataa |
47798759 |
T |
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