View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15697_high_14 (Length: 233)
Name: NF15697_high_14
Description: NF15697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15697_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 26316319 - 26316224
Alignment:
| Q |
119 |
tgtttggggacacttcaagcgggtattaaagagttctaatcaattataaattatcattttgatagagaaaaatatataaggtggtatctttacact |
214 |
Q |
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| T |
26316319 |
tgtttggggacacttcaagcgggtattaaagagttctaatcaattataaattatcattttgatagagaaaaatatataaggtggtatctttacact |
26316224 |
T |
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Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 26316389 - 26316305
Alignment:
| Q |
15 |
taacaaagggcctatgtattaaagttggtcattattttaactctgaatttttcaaatgtggtctgtgtcatgtttggggacactt |
99 |
Q |
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| T |
26316389 |
taactaagggcctatgtattaaagttggtcattattttaactctgaatttttcaaatgtggtgtgtgtcatgtttggggacactt |
26316305 |
T |
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