View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15697_high_2 (Length: 474)
Name: NF15697_high_2
Description: NF15697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15697_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 12600076 - 12599773
Alignment:
| Q |
19 |
aatctttgtctgtttgtttctgaattgttcttctcttataagcgtgcttaagctgcacttttgacattgaatctctgtcatgactcatgctcattacaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12600076 |
aatctttgtctgtttgtttctgaattgttcttctcttataagcgtgcttaagctgcacttttgacattgaatctctgtcatgactcgtgctcattacaaa |
12599977 |
T |
|
| Q |
119 |
tatgtgtaacttgcaccttggcaagttgatgtannnnnnnctagcaaagcaaacaaagaaggtttatccttactcttctctgttcttttttcccttcaac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12599976 |
tatgtgtaacttgcaccttggcaagttgatgtatttttttctagcaaagcaaacaaagaaggtttatccttactcttctctgttcttttttcccttcaac |
12599877 |
T |
|
| Q |
219 |
tgcagggaacagaaactgtagagggattggttttgaaggtgcaaagaaccaatagggttctctagagtactgatactttcaaggagatgaagaaactaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12599876 |
tgcagggaacagaaactgtagagggattggttttgaaggtgcaaagaaccaatagggttctctagagtactgatactttcaaggagatgaagaaactaag |
12599777 |
T |
|
| Q |
319 |
actt |
322 |
Q |
| |
|
|||| |
|
|
| T |
12599776 |
actt |
12599773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 12598673 - 12598622
Alignment:
| Q |
317 |
agacttgtgatatagaagtgaaatgaagtatttttgatacttatatcagtgc |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12598673 |
agacttgtgatatagaagtgaaatgaagtattttttatacttatatcagtgc |
12598622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 3374248 - 3374545
Alignment:
| Q |
19 |
aatctttgtctgtttgtttct-gaattgttcttctcttataagcgtgcttaagctgcacttttga-cattgaatctctgtcatgactcatgctcattaca |
116 |
Q |
| |
|
||||||||| ||||||||||| |||||||| | |||||||||| || ||| |||||||||||||| | |||||| || |||||||||||||||||||||| |
|
|
| T |
3374248 |
aatctttgtttgtttgtttcttgaattgttttgctcttataagtgtacttcagctgcacttttgatcgttgaatttcagtcatgactcatgctcattaca |
3374347 |
T |
|
| Q |
117 |
aatatgtgtaacttgcaccttggcaagttgatgtannnnnnnctagcaaagcaaacaaagaaggtttatccttactcttctctgttcttttttcccttca |
216 |
Q |
| |
|
| | ||||||| ||| ||| ||||||||||||||| || |||| ||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
3374348 |
agtgtgtgtaagttgtaccctggcaagttgatgtattattttcttgcaa-gcaaacaaagaaggtttatccatactcttctctgttctcttttcccttca |
3374446 |
T |
|
| Q |
217 |
actgcagggaacagaaactgtagagggattggttttgaaggtgcaaagaaccaatagggttctctagagtactgatactttcaaggagatgaagaaact |
315 |
Q |
| |
|
| |||| ||||| |||||||||||||||||||||||||||||||||||||| | ||||||| | | ||||||||||||||||||||||||||||||||| |
|
|
| T |
3374447 |
aatgcaaggaactgaaactgtagagggattggttttgaaggtgcaaagaactagtagggttttttggagtactgatactttcaaggagatgaagaaact |
3374545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 222 - 322
Target Start/End: Complemental strand, 3325820 - 3325720
Alignment:
| Q |
222 |
agggaacagaaactgtagagggattggttttgaaggtgcaaagaaccaatagggttctctagagtactgatactttcaaggagatgaagaaactaagact |
321 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||| ||| ||| || ||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
3325820 |
agggaacaaaatctgtagagggattggttttgaaggtgcaaagaaccattagaattcccttaagtactgattctttcaaggagatgaagaaactgagact |
3325721 |
T |
|
| Q |
322 |
t |
322 |
Q |
| |
|
| |
|
|
| T |
3325720 |
t |
3325720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 3287354 - 3287309
Alignment:
| Q |
222 |
agggaacagaaactgtagagggattggttttgaaggtgcaaagaac |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3287354 |
agggaacagaaactgtagagggattggttttgaagtcgcaaagaac |
3287309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 322
Target Start/End: Complemental strand, 3263383 - 3263283
Alignment:
| Q |
222 |
agggaacagaaactgtagagggattggttttgaaggtgcaaagaaccaatagggttctctagagtactgatactttcaaggagatgaagaaactaagact |
321 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| | | ||||||||| || ||| || ||| ||||| |||||||||| |||||||| || ||||| |
|
|
| T |
3263383 |
agggaacagaaactgtagagggattgattttgaggtttgaaagaaccagcagagtttgcttcagtgctgattctttcaaggaaatgaagaatctgagact |
3263284 |
T |
|
| Q |
322 |
t |
322 |
Q |
| |
|
| |
|
|
| T |
3263283 |
t |
3263283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 322
Target Start/End: Complemental strand, 32411914 - 32411804
Alignment:
| Q |
212 |
cttcaactgcagggaacagaaactgtagagggattggttttgaaggtgcaaagaaccaatagggttctctagagtactgatactttcaaggagatgaaga |
311 |
Q |
| |
|
|||||| |||||| |||| ||||||| |||||||||| || ||| ||||||||||| | || ||| || |||||| || |||||||||| ||||||| |
|
|
| T |
32411914 |
cttcaaatgcaggtaacaaaaactgtggagggattggcgtttaagttgcaaagaaccgacagagtttgcttcagtactaattctttcaaggaaatgaaga |
32411815 |
T |
|
| Q |
312 |
aactaagactt |
322 |
Q |
| |
|
||||||||||| |
|
|
| T |
32411814 |
aactaagactt |
32411804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University