View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15697_low_10 (Length: 258)
Name: NF15697_low_10
Description: NF15697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15697_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 31492729 - 31492511
Alignment:
| Q |
22 |
ccaacaaaagcatcataaatcatatgttcaactccagtcaccccactggttattgcacatgcaactccaatcaaccctacttttaatcccaatctttcaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31492729 |
ccaacaaaagcatcataaatcatatgttcaactccagtcaccccactggttattgcacatgcaactccaatcaaccctacttttaatcccaatctttcaa |
31492630 |
T |
|
| Q |
122 |
aacgactcctcttaggtttttgtggtcttggattaacatgtggatacattggtggagcctgcaaataaggttgtggagtatatagataggtcgctggaac |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31492629 |
aacgactcctcttaggtttttgtggtcttggattaacatgtggatacattggtggagcctgcaaataaggttgtggagtatatagataggtcgctggaac |
31492530 |
T |
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| Q |
222 |
cggtggagcctgtggataa |
240 |
Q |
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||||||||| ||||||||| |
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| T |
31492529 |
cggtggagcttgtggataa |
31492511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 31498118 - 31497900
Alignment:
| Q |
22 |
ccaacaaaagcatcataaatcatatgttcaactccagtcaccccactggttattgcacatgcaactccaatcaaccctacttttaatcccaatctttcaa |
121 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31498118 |
ccaacaaaagcatcataaatcatatgttcaactccagtcaccccactggttattgcacatgcaactccaatcaaccctacttttaatcccaatctttcaa |
31498019 |
T |
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| Q |
122 |
aacgactcctcttaggtttttgtggtcttggattaacatgtggatacattggtggagcctgcaaataaggttgtggagtatatagataggtcgctggaac |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31498018 |
aacgactcctcttaggtttttgtggtcttggattaacatgtggatacattggtggagcctgcaaataaggttgtggagtatatagataggtcgctggaac |
31497919 |
T |
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| Q |
222 |
cggtggagcctgtggataa |
240 |
Q |
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||||||||| ||||||||| |
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| T |
31497918 |
cggtggagcttgtggataa |
31497900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 31503505 - 31503287
Alignment:
| Q |
22 |
ccaacaaaagcatcataaatcatatgttcaactccagtcaccccactggttattgcacatgcaactccaatcaaccctacttttaatcccaatctttcaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31503505 |
ccaacaaaagcatcataaatcatatgttcaactccagtcaccccactggttattgcacatgcaactccaatcaaccctacttttaatcccaatctttcaa |
31503406 |
T |
|
| Q |
122 |
aacgactcctcttaggtttttgtggtcttggattaacatgtggatacattggtggagcctgcaaataaggttgtggagtatatagataggtcgctggaac |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31503405 |
aacgactcctcttaggtttttgtggtcttggattaacatgtggatacattggtggagcctgcaaataaggttgtggagtatatagataggtcgctggaac |
31503306 |
T |
|
| Q |
222 |
cggtggagcctgtggataa |
240 |
Q |
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||||||||| ||||||||| |
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| T |
31503305 |
cggtggagcttgtggataa |
31503287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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