View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15697_low_11 (Length: 251)

Name: NF15697_low_11
Description: NF15697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15697_low_11
NF15697_low_11
[»] chr6 (7 HSPs)
chr6 (14-99)||(33603563-33603648)
chr6 (143-194)||(33603873-33603924)
chr6 (217-251)||(13143389-13143423)
chr6 (217-251)||(30152537-30152571)
chr6 (222-251)||(2075458-2075487)
chr6 (222-251)||(4820286-4820315)
chr6 (222-251)||(34504055-34504084)
[»] chr5 (7 HSPs)
chr5 (217-251)||(8267827-8267861)
chr5 (217-251)||(5042278-5042312)
chr5 (217-251)||(16437572-16437606)
chr5 (217-251)||(21064233-21064267)
chr5 (217-251)||(35099012-35099046)
chr5 (217-251)||(43441768-43441802)
chr5 (222-251)||(18842328-18842357)
[»] chr4 (11 HSPs)
chr4 (217-251)||(39344987-39345021)
chr4 (212-249)||(47240842-47240879)
chr4 (194-251)||(6141785-6141850)
chr4 (196-246)||(35820179-35820230)
chr4 (217-251)||(624319-624353)
chr4 (217-251)||(5932164-5932198)
chr4 (217-251)||(22819679-22819713)
chr4 (217-251)||(30079876-30079910)
chr4 (193-250)||(25318073-25318129)
chr4 (222-251)||(41486150-41486179)
chr4 (195-251)||(48335564-48335618)
[»] chr2 (6 HSPs)
chr2 (217-251)||(13347822-13347856)
chr2 (217-251)||(29684619-29684653)
chr2 (219-251)||(433882-433914)
chr2 (216-251)||(13265994-13266029)
chr2 (217-251)||(18176970-18177004)
chr2 (217-250)||(39449297-39449330)
[»] chr1 (9 HSPs)
chr1 (217-251)||(20565125-20565159)
chr1 (217-251)||(1852958-1852992)
chr1 (217-251)||(3603141-3603175)
chr1 (217-251)||(8411725-8411759)
chr1 (217-251)||(9008255-9008289)
chr1 (217-251)||(33024578-33024612)
chr1 (217-251)||(36577419-36577453)
chr1 (217-250)||(1790538-1790571)
chr1 (194-249)||(38303697-38303749)
[»] chr7 (7 HSPs)
chr7 (219-251)||(40353296-40353328)
chr7 (217-251)||(7295480-7295514)
chr7 (217-251)||(39231735-39231769)
chr7 (217-250)||(13162949-13162982)
chr7 (217-250)||(41402537-41402570)
chr7 (217-250)||(46773650-46773683)
chr7 (194-251)||(26749016-26749068)
[»] scaffold0321 (1 HSPs)
scaffold0321 (217-251)||(19666-19700)
[»] chr8 (8 HSPs)
chr8 (217-251)||(1633897-1633931)
chr8 (217-251)||(7956014-7956048)
chr8 (217-251)||(11017835-11017869)
chr8 (217-251)||(11658007-11658041)
chr8 (217-251)||(16966815-16966849)
chr8 (217-251)||(45529253-45529287)
chr8 (217-250)||(37783979-37784012)
chr8 (219-251)||(35564321-35564353)
[»] chr3 (8 HSPs)
chr3 (217-251)||(10206980-10207014)
chr3 (217-251)||(24482970-24483004)
chr3 (217-251)||(49363258-49363292)
chr3 (217-251)||(50206977-50207011)
chr3 (222-251)||(37508505-37508534)
chr3 (194-251)||(39020166-39020225)
chr3 (219-251)||(39697229-39697261)
chr3 (219-251)||(43905005-43905037)
[»] scaffold0204 (1 HSPs)
scaffold0204 (195-251)||(23086-23140)


Alignment Details
Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 33603563 - 33603648
Alignment:
Q  14 gatcttaattcatccacttgtttgtgtgattgtaaaaaatttaagtatataaattttcttgtttctcaagaatctagctacttagt 99  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33603563 gatcttaattcatccacttgtttgtgtgattgtaaaaaattaaagtatataaattttcttgtttctcaagaatctagctacttagt 33603648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 33603873 - 33603924
Alignment:
Q  143 ttatgcttagtttcacatggtcatgtgagccagctagtgtggttaaatttta 194  Q
    |||||||||||||||||||||||||||||| |||||||| |||||| |||||    
T  33603873 ttatgcttagtttcacatggtcatgtgagctagctagtggggttaagtttta 33603924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 13143423 - 13143389
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||||||||||||||||||||||||||||||||||    
T  13143423 acaatttttgcaacaactttctctctcatactcac 13143389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 30152571 - 30152537
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  30152571 acaacttttgcaacaactttctctctcatactcac 30152537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 2075487 - 2075458
Alignment:
Q  222 ttttgcaacaactttctctctcatactcac 251  Q
    ||||||||||||||||||||||||||||||    
T  2075487 ttttgcaacaactttctctctcatactcac 2075458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 4820286 - 4820315
Alignment:
Q  222 ttttgcaacaactttctctctcatactcac 251  Q
    ||||||||||||||||||||||||||||||    
T  4820286 ttttgcaacaactttctctctcatactcac 4820315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 34504055 - 34504084
Alignment:
Q  222 ttttgcaacaactttctctctcatactcac 251  Q
    ||||||||||||||||||||||||||||||    
T  34504055 ttttgcaacaactttctctctcatactcac 34504084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 8267861 - 8267827
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||||||||||||||||||||||||||||||||||    
T  8267861 acaatttttgcaacaactttctctctcatactcac 8267827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 5042278 - 5042312
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||||||||||||||||||| ||||||||||||||    
T  5042278 acaatttttgcaacaactttatctctcatactcac 5042312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 16437606 - 16437572
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  16437606 acaacttttgcaacaactttctctctcatactcac 16437572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 21064267 - 21064233
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  21064267 acaacttttgcaacaactttctctctcatactcac 21064233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 35099046 - 35099012
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  35099046 acaacttttgcaacaactttctctctcatactcac 35099012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 43441768 - 43441802
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  43441768 acaacttttgcaacaactttctctctcatactcac 43441802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 18842357 - 18842328
Alignment:
Q  222 ttttgcaacaactttctctctcatactcac 251  Q
    ||||||||||||||||||||||||||||||    
T  18842357 ttttgcaacaactttctctctcatactcac 18842328  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 39345021 - 39344987
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||||||||||||||||||||||||||||||||||    
T  39345021 acaatttttgcaacaactttctctctcatactcac 39344987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 47240842 - 47240879
Alignment:
Q  212 tattcacaatttttgcaacaactttctctctcatactc 249  Q
    |||| |||||||||||||||||||||||||||||||||    
T  47240842 tattgacaatttttgcaacaactttctctctcatactc 47240879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 6141850 - 6141785
Alignment:
Q  194 agagaaatgatatttgaatattca--------caatttttgcaacaactttctctctcatactcac 251  Q
    ||||||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||    
T  6141850 agagaaatgatatttgaatattcatttattgacaacttttgcaacaactttctctctcatactcac 6141785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 35820179 - 35820230
Alignment:
Q  196 agaaatgatatttgaatattca-caatttttgcaacaactttctctctcata 246  Q
    |||||||||||||||| ||||| ||| |||| ||||||||||||||||||||    
T  35820179 agaaatgatatttgaacattcaacaacttttacaacaactttctctctcata 35820230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 624353 - 624319
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  624353 acaacttttgcaacaactttctctctcatactcac 624319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 5932198 - 5932164
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  5932198 acaacttttgcaacaactttctctctcatactcac 5932164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 22819679 - 22819713
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  22819679 acaacttttgcaacaactttctctctcatactcac 22819713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 30079876 - 30079910
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  30079876 acaacttttgcaacaactttctctctcatactcac 30079910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 25318129 - 25318073
Alignment:
Q  193 tagagaaatgatatttgaatattcacaatttttgcaacaactttctctctcatactca 250  Q
    ||||||||||||||||||||| | | || |||||| |||| |||||||||||||||||    
T  25318129 tagagaaatgatatttgaata-tgataacttttgcgacaattttctctctcatactca 25318073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 41486179 - 41486150
Alignment:
Q  222 ttttgcaacaactttctctctcatactcac 251  Q
    ||||||||||||||||||||||||||||||    
T  41486179 ttttgcaacaactttctctctcatactcac 41486150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 48335564 - 48335618
Alignment:
Q  195 gagaaatgatatttgaatattcacaatttttgcaacaactttctctctcatactcac 251  Q
    ||||||||||||| ||| ||  |||||||||||||||| ||||||||||||| ||||    
T  48335564 gagaaatgatattcgaacat--acaatttttgcaacaattttctctctcatattcac 48335618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 13347856 - 13347822
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||||||||||||||||||||||||||||||||||    
T  13347856 acaatttttgcaacaactttctctctcatactcac 13347822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 29684653 - 29684619
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||||||||||||||||||||||||||||||||||    
T  29684653 acaatttttgcaacaactttctctctcatactcac 29684619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 433882 - 433914
Alignment:
Q  219 aatttttgcaacaactttctctctcatactcac 251  Q
    |||||||||||||||||||||||||||||||||    
T  433882 aatttttgcaacaactttctctctcatactcac 433914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 13265994 - 13266029
Alignment:
Q  216 cacaatttttgcaacaactttctctctcatactcac 251  Q
    ||||||||||||||||| ||||||||||||||||||    
T  13265994 cacaatttttgcaacaattttctctctcatactcac 13266029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 18176970 - 18177004
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  18176970 acaacttttgcaacaactttctctctcatactcac 18177004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 39449297 - 39449330
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactca 250  Q
    |||| |||||||||||||||||||||||||||||    
T  39449297 acaacttttgcaacaactttctctctcatactca 39449330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 20565159 - 20565125
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||||||||||||||||||||||||||||||||||    
T  20565159 acaatttttgcaacaactttctctctcatactcac 20565125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 1852992 - 1852958
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  1852992 acaacttttgcaacaactttctctctcatactcac 1852958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 3603141 - 3603175
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  3603141 acaacttttgcaacaactttctctctcatactcac 3603175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 8411759 - 8411725
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  8411759 acaacttttgcaacaactttctctctcatactcac 8411725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 9008255 - 9008289
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  9008255 acaacttttgcaacaactttctctctcatactcac 9008289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 33024612 - 33024578
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  33024612 acaacttttgcaacaactttctctctcatactcac 33024578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 36577453 - 36577419
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  36577453 acaacttttgcaacaactttctctctcatactcac 36577419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 1790538 - 1790571
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactca 250  Q
    |||| |||||||||||||||||||||||||||||    
T  1790538 acaacttttgcaacaactttctctctcatactca 1790571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 38303749 - 38303697
Alignment:
Q  194 agagaaatgatatttgaatattcacaatttttgcaacaactttctctctcatactc 249  Q
    |||||||||||||||||| ||   ||| |||| |||||||||||||||||||||||    
T  38303749 agagaaatgatatttgaacat---caacttttacaacaactttctctctcatactc 38303697  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 40353296 - 40353328
Alignment:
Q  219 aatttttgcaacaactttctctctcatactcac 251  Q
    |||||||||||||||||||||||||||||||||    
T  40353296 aatttttgcaacaactttctctctcatactcac 40353328  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 7295480 - 7295514
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||||||||| ||||||||||||||||||||||||    
T  7295480 acaatttttggaacaactttctctctcatactcac 7295514  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 39231769 - 39231735
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  39231769 acaacttttgcaacaactttctctctcatactcac 39231735  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 13162949 - 13162982
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactca 250  Q
    |||| |||||||||||||||||||||||||||||    
T  13162949 acaacttttgcaacaactttctctctcatactca 13162982  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 41402537 - 41402570
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactca 250  Q
    |||| |||||||||||||||||||||||||||||    
T  41402537 acaacttttgcaacaactttctctctcatactca 41402570  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 46773683 - 46773650
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactca 250  Q
    |||||||||||||||| |||||||||||||||||    
T  46773683 acaatttttgcaacaattttctctctcatactca 46773650  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 26749016 - 26749068
Alignment:
Q  194 agagaaatgatatttgaatattcacaatttttgcaacaactttctctctcatactcac 251  Q
    |||||||||||||||||| |   ||||||||||  |||||||||||||||||||||||    
T  26749016 agagaaatgatatttgaaca---acaatttttg--acaactttctctctcatactcac 26749068  T

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Target: scaffold0321 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 19666 - 19700
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  19666 acaacttttgcaacaactttctctctcatactcac 19700  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 1633931 - 1633897
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  1633931 acaacttttgcaacaactttctctctcatactcac 1633897  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 7956048 - 7956014
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  7956048 acaacttttgcaacaactttctctctcatactcac 7956014  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 11017835 - 11017869
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  11017835 acaacttttgcaacaactttctctctcatactcac 11017869  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 11658041 - 11658007
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  11658041 acaacttttgcaacaactttctctctcatactcac 11658007  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 16966815 - 16966849
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  16966815 acaacttttgcaacaactttctctctcatactcac 16966849  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 45529287 - 45529253
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||||||||| ||||||||||||||||||||||||    
T  45529287 acaatttttgtaacaactttctctctcatactcac 45529253  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 37784012 - 37783979
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactca 250  Q
    |||| |||||||||||||||||||||||||||||    
T  37784012 acaacttttgcaacaactttctctctcatactca 37783979  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 35564321 - 35564353
Alignment:
Q  219 aatttttgcaacaactttctctctcatactcac 251  Q
    |||||||||||||||||||| ||||||||||||    
T  35564321 aatttttgcaacaactttctatctcatactcac 35564353  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 10207014 - 10206980
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  10207014 acaacttttgcaacaactttctctctcatactcac 10206980  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 24483004 - 24482970
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  24483004 acaacttttgcaacaactttctctctcatactcac 24482970  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 49363292 - 49363258
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  49363292 acaacttttgcaacaactttctctctcatactcac 49363258  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 50207011 - 50206977
Alignment:
Q  217 acaatttttgcaacaactttctctctcatactcac 251  Q
    |||| ||||||||||||||||||||||||||||||    
T  50207011 acaacttttgcaacaactttctctctcatactcac 50206977  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 37508534 - 37508505
Alignment:
Q  222 ttttgcaacaactttctctctcatactcac 251  Q
    ||||||||||||||||||||||||||||||    
T  37508534 ttttgcaacaactttctctctcatactcac 37508505  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 39020225 - 39020166
Alignment:
Q  194 agagaaatgatatttgaatattc--acaatttttgcaacaactttctctctcatactcac 251  Q
    |||||||||||||||||| ||||  |||| |||| ||| |||||| ||||||||||||||    
T  39020225 agagaaatgatatttgaacattcagacaacttttacaataactttttctctcatactcac 39020166  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 39697261 - 39697229
Alignment:
Q  219 aatttttgcaacaactttctctctcatactcac 251  Q
    |||||||| ||||||||||||||||||||||||    
T  39697261 aatttttgtaacaactttctctctcatactcac 39697229  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 43905005 - 43905037
Alignment:
Q  219 aatttttgcaacaactttctctctcatactcac 251  Q
    |||||||| ||||||||||||||||||||||||    
T  43905005 aatttttgtaacaactttctctctcatactcac 43905037  T

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Target: scaffold0204 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 23086 - 23140
Alignment:
Q  195 gagaaatgatatttgaatattcacaatttttgcaacaactttctctctcatactcac 251  Q
    ||||||||||||| ||| ||  |||||||||||||||| ||||||||||||| ||||    
T  23086 gagaaatgatattcgaacat--acaatttttgcaacaattttctctctcatattcac 23140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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