View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15697_low_13 (Length: 246)
Name: NF15697_low_13
Description: NF15697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15697_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 11225868 - 11226101
Alignment:
| Q |
1 |
tgtggtggattaacgagtataataataagtcatgcatgtacttttaaacgggaaatgctggttctcgcggcataatgtatagtgaatagttcacgagcat |
100 |
Q |
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| T |
11225868 |
tgtggtggattaatgagtataataataagtcatgcttgtacttttaaacgggaaatgctggttctcgcggcataatgtatagtgaatagttcacgagcat |
11225967 |
T |
|
| Q |
101 |
acgtagcttactgaacagtaannnnnnnattcaatacaaactgcccatgtatggttagtgggcccttgttaataggctgctacactgttcgtgatttttt |
200 |
Q |
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| T |
11225968 |
acgtagcttactgaacagtaatttttttattcaatacaaactgcccatgtatggttagtgggcccttgttaataggctgctacactgttcgtgatttttt |
11226067 |
T |
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| Q |
201 |
cgttataactttttcgctatatatagcaccgttc |
234 |
Q |
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||| |||||||||||||||||||||||||||||| |
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| T |
11226068 |
cgtcataactttttcgctatatatagcaccgttc |
11226101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 47743160 - 47742927
Alignment:
| Q |
1 |
tgtggtggattaacgagtataataataagtcatgcatgtacttttaaacgggaaatgctggttctcgcggcataatgtatagtgaatagttcacgagcat |
100 |
Q |
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| T |
47743160 |
tgtggtggattaatgagtataataataagtcatgcttgtacttttaaacggtaaatgctggttctcgcgtcataatgtatagtgaatagttcacgagcat |
47743061 |
T |
|
| Q |
101 |
acgtagcttactgaacagtaannnnnnnattcaatacaaactgcccatgtatggttagtgggcccttgttaataggctgctacactgttcgtgatttttt |
200 |
Q |
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| T |
47743060 |
acgtagcttactgaacagtaatttttttattcaatacaaactgcccatgtatggttagtgggcccttgttaataggctgctacactgttcgtgatttttt |
47742961 |
T |
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| Q |
201 |
cgttataactttttcgctatatatagcaccgttc |
234 |
Q |
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| T |
47742960 |
cgtcataactttttcgctatatatagcaccgttc |
47742927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 36399817 - 36399640
Alignment:
| Q |
50 |
gggaaatgctggttctcgcggcataatgtatagtgaatagttcacgagcatacgtagcttactgaacagtaannnnnnnattcaatacaaactgcccatg |
149 |
Q |
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||||||| ||||||||||| |||||||||||| ||||||||||| ||||||| | ||| ||| | ||||| ||||||||||||||||| ||| |
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| T |
36399817 |
gggaaatattggttctcgcgacataatgtatagcgaatagttcacaagcatacatgactttctgtagagtaatttttttattcaatacaaactgcc-atg |
36399719 |
T |
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| Q |
150 |
tatggttagtgggcccttgttaataggctgctacactgttcgtgatttttt-cgttataacttttt-cgctatatatagcac |
229 |
Q |
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| T |
36399718 |
tatggttagtgggtgcttattaatagtct---acattgttcgtgatttttttctttataatttttttcgctatatatagcac |
36399640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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