View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15697_low_4 (Length: 385)
Name: NF15697_low_4
Description: NF15697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15697_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 3013314 - 3013690
Alignment:
| Q |
1 |
ccaagtttctgagcatatcccttagttactaatctagctttgtatttctcaacctctcctttctcattcaatttggtcttttatatccatttaaaaccaa |
100 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3013314 |
ccaagcttctgagcatatcccttagctactaatctagctttgtatttctcaacctctcctttctcattcaatttggtcttttatatccatttataaccaa |
3013413 |
T |
|
| Q |
101 |
ttttcttgcatccagcaggcaaagtagcaagttcccaagtgttgttgctttcaatggaatctatttcctgcttcattgcttctctccatactttcagttt |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3013414 |
ttttcttgcatccagcaggtaaagtagcaagttcccaagtgttgttgctttcaatggaatctatttcctgcttcattgcttctctccatactttcagttt |
3013513 |
T |
|
| Q |
201 |
ggatgcttattcaaaagcattgggatcatataaagtactgaatagagctagactatttagttgttcttcctcttcagcttctcttccagtcacataatca |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3013514 |
ggatgcttcttcaaaagcattgggatcatataaagtactgaatagagctagactatttagttgttcttcctcttcagcttctcttccagtcacataatca |
3013613 |
T |
|
| Q |
301 |
tctagaaagcgtggaggatttcttgctctagggggaagctttaattgagtcatcaaatgactcaagatccatttcttcttc |
381 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3013614 |
tctagaaagcttggaggatttcttgctctagggggaagct----ttgagtcatcaaatgactcaagatccatttcttcttc |
3013690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 341
Target Start/End: Complemental strand, 3037783 - 3037672
Alignment:
| Q |
233 |
aagtactgaatagagctagactatttagttgttcttcc---tcttcagcttctcttccagtcacataatcatctagaaagcgtggaggatttcttgctct |
329 |
Q |
| |
|
|||||||||||| |||||| |||| |||||||||| |||||||| ||||||| ||| |||||||||| ||| | | ||| |||||||||| ||| |
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| T |
3037783 |
aagtactgaataaagctaggttattatgttgttcttctccttcttcagcgtctcttctagttacataatcatataggtaacttggtggatttcttgttct |
3037684 |
T |
|
| Q |
330 |
agggggaagctt |
341 |
Q |
| |
|
|||||||||||| |
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|
| T |
3037683 |
agggggaagctt |
3037672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 20530974 - 20530595
Alignment:
| Q |
1 |
ccaagtttctgagcatatcccttagttactaatctagctttgtatttctcaacctctcctttctcattcaatttggtcttttatatccatttaaaaccaa |
100 |
Q |
| |
|
||||| || |||||||||||||||| | || ||| |||||||| |||| || |||||||||||||||| ||||||||| ||| |||||| | ||||| |
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| T |
20530974 |
ccaagcttttgagcatatcccttagctcttactctggctttgtacttcttaatttctcctttctcattcagtttggtcttgaatacccatttgacaccaa |
20530875 |
T |
|
| Q |
101 |
ttttctt--gcatccagcaggcaaagtagcaagttcccaagtgttgttgctttcaatggaatctatttcctgcttcattgcttctctccatactttcagt |
198 |
Q |
| |
|
|||| || ||| ||| |||| ||||||| ||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| || |||| | |
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|
| T |
20530874 |
tttttttttgcaaccaacaggtaaagtagtaagttcccaagtgttattgctttcaatggagtctatttcttgcttcattgcttctctccaaaccttcact |
20530775 |
T |
|
| Q |
199 |
ttggatgcttattcaaaagcattgggatcatataaagtactgaatagagctagactatttagttgttcttcctcttcagcttctcttccagtcacataat |
298 |
Q |
| |
|
|| ||||||| ||||| | ||||||| | || ||| || |||||||| ||| |||| ||||||||||| |||||||| |||||| |||||||||||| |
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|
| T |
20530774 |
ttagatgcttcctcaaaggtgttgggatgaaatgaagcaccaaatagagccagattattcagttgttcttcttcttcagcatctctt-cagtcacataat |
20530676 |
T |
|
| Q |
299 |
catctagaaagcgtggaggatttcttgctctagggggaagctttaattgagtcatcaaatgactcaagatccatttcttcttcat |
383 |
Q |
| |
|
|||||||| ||| |||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| |||||||||| |
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|
| T |
20530675 |
catctagatagcttggaggatttcttgttctagggggaagct----ctgattcatcaaatgactcaagatccatctcttcttcat |
20530595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 10 - 383
Target Start/End: Original strand, 5145258 - 5145623
Alignment:
| Q |
10 |
tgagcatatcccttagttactaatctagctttgtatttctcaacctctcctttctcattcaatttggtcttttatatccatttaaaaccaattttcttgc |
109 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||| ||| |||| || ||||| || ||||| |||| |||||||| ||||||||||||| |
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| T |
5145258 |
tgagcatatcccttagctactaatctagctttgtacttctcaaactcccctt-cttattcagcttagtcttatatacccatttaactccaattttcttgc |
5145356 |
T |
|
| Q |
110 |
atccagcaggcaaagtagcaagttcccaagtgttgttgctttcaatggaatctatttcctgcttcattgcttctctccatactttcagtttggatgctta |
209 |
Q |
| |
|
|| ||||| ||| | |||||||||||||| |||||||| ||||| |||||||| || |||||||| |||||||| | |||||||| || |||| |
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|
| T |
5145357 |
at---gcaggtaaatcaatgagttcccaagtgttattgctttctatggattctatttcatgtttcattgcatctctccaaatcttcagtttagaagcttc |
5145453 |
T |
|
| Q |
210 |
ttcaaaagcattgggatcatataaagtactgaatagagctagactatttagttgttcttcctcttcagcttctcttccagtcacataatcatctagaaag |
309 |
Q |
| |
|
||| ||| ||| |||||| || | || ||||||||| |||||||||| ||||||| ||| |||||| ||||| |||||| |||||||||||||| || |
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|
| T |
5145454 |
ctcataagtattaggatcagatgaggtgctgaatagaactagactattcagttgttgttcttcttcaacttcttctccagttacataatcatctaggtag |
5145553 |
T |
|
| Q |
310 |
cgtggaggatttcttgctctagggggaagctttaattgagtcatcaaatgactcaagatccatttcttcttcat |
383 |
Q |
| |
|
| ||||| | |||||||||||||||||||| ||| |||||| || |||||||||||||||||||||||| |
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|
| T |
5145554 |
ctaggaggttctcttgctctagggggaagct----ctgaatcatcagataactcaagatccatttcttcttcat |
5145623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 29943088 - 29943188
Alignment:
| Q |
58 |
cctttctcattcaatttggtcttttatatccatttaaaaccaattttcttgcatccagcaggcaaagtagcaagttcccaagtgttgttgctttcaatgg |
157 |
Q |
| |
|
|||||||||||||| ||||| || || | |||||| | ||||||||||||| ||||| ||| ||| ||| ||| ||||| || ||||| || ||||||| |
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|
| T |
29943088 |
cctttctcattcaacttggttttatagacccatttcacaccaattttcttggctccagaaggtaaactagtaagatcccatgtattgttcctctcaatgg |
29943187 |
T |
|
| Q |
158 |
a |
158 |
Q |
| |
|
| |
|
|
| T |
29943188 |
a |
29943188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 16865353 - 16865158
Alignment:
| Q |
1 |
ccaagtttctgagcatatcccttagttactaatctagctttgtatttctcaacctctcctttctcattcaatttggtcttttatatccatttaaaaccaa |
100 |
Q |
| |
|
||||||| | |||||||||| |||| || ||||| |||||||| || |||| || | ||| ||||||| || || || |||||||| |||| || | |
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|
| T |
16865353 |
ccaagttacggagcatatccattagcaaccaatctggctttgtacttttcaatttcccttttttcattcagcttagttttatatatccacttaactccta |
16865254 |
T |
|
| Q |
101 |
ttttcttgcatccagcaggcaaagtagcaagttcccaagtgttgttgctttcaatggaatctatttcctgcttcattgcttctctccatactttca |
196 |
Q |
| |
|
| |||||||| || || || ||| || |||||||||| ||||||| |||||||| || || |||||||||||||| ||||||||| |||| |||| |
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|
| T |
16865253 |
tcttcttgcaacctgctggtaaatcagtaagttcccaaatgttgttactttcaatagattcaatttcctgcttcatagcttctctcaataccttca |
16865158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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