View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15697_low_6 (Length: 323)
Name: NF15697_low_6
Description: NF15697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15697_low_6 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 61 - 307
Target Start/End: Original strand, 10863459 - 10863704
Alignment:
| Q |
61 |
agagtaataactatgcgagtgttatagagccgaaccaatcagaggagttagaatgcaatagttgttgtcttagtcaacttcagactgtgaatatcagagt |
160 |
Q |
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| T |
10863459 |
agagtaataactatgatggtgttgaagagccgaaccaatcggaggagttagaatgcaatagttgttgtcttagtcaacttcagacggtgcgtatcagagt |
10863558 |
T |
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| Q |
161 |
tggaaccaggtttaaacatgcaatgagtttgatacggttcatacttgcaaattcctcgtcattaaagactcttacttttgaagttaattttggtcataag |
260 |
Q |
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| T |
10863559 |
tggaggcaggtttaaaaatgcaatgagtttgatacggttcatacttgcaaattcctcgtcattaaagactcttacttttaaagttggttttgg-cataag |
10863657 |
T |
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| Q |
261 |
aattttgattgagcaattcttttgaacatttcacaagacttgttaag |
307 |
Q |
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| T |
10863658 |
aattttgatgcagcaattctgttaaacatttcacaagacttgttaag |
10863704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 112 - 307
Target Start/End: Original strand, 10904557 - 10904751
Alignment:
| Q |
112 |
aatgcaatagttgttgtcttagtcaacttcagactgtgaatatcagagttggaaccaggtttaaacatgcaatgagtttgatacggttcatacttgcaaa |
211 |
Q |
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| T |
10904557 |
aatgcaatagttgttgtcttagttaacttcagactgtgcatatcagagttggaggcaggtttaaacatgcaatgagtttgatacggttcatacttggaaa |
10904656 |
T |
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| Q |
212 |
ttcctcgtcattaaagactcttacttttgaagttaattttggtcataagaattttgattgagcaattcttttgaacatttcacaagacttgttaag |
307 |
Q |
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| T |
10904657 |
ttcctcatcgttaaa-actcttacttttaaagttggttttggtcataagaattttgatgcagcaattctgttaaacatttcacaagacttgttaag |
10904751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 10902895 - 10902953
Alignment:
| Q |
61 |
agagtaataactatgcgagtgttatagagccgaaccaatcagaggagttagaatgcaat |
119 |
Q |
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| T |
10902895 |
agagtattaactatgcttgtgttgaagagccgaaccaatcggaggagttagaatgcaat |
10902953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 94 - 235
Target Start/End: Complemental strand, 2310 - 2169
Alignment:
| Q |
94 |
accaatcagaggagttagaatgcaatagttgttgtcttagtcaacttcagactgtgaatatcagagttggaaccaggtttaaacatgcaatgagtttgat |
193 |
Q |
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| T |
2310 |
accaaccagaggagttagaatgcacaagttgttgccttagtagactacagactgtgattatcagcactggaaccatctttaaaaatgcaatgagtttggc |
2211 |
T |
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| Q |
194 |
acggttcatacttgcaaattcctcgtcattaaagactcttac |
235 |
Q |
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| T |
2210 |
acaattcatacttgcaaattcctcatcattaacgactcttac |
2169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 35748017 - 35747871
Alignment:
| Q |
99 |
tcagaggagttagaatgcaatagttgttgtcttagtcaacttcagactgtgaatatcagagttggaaccaggtttaaacatgcaatgagtttgatacggt |
198 |
Q |
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| T |
35748017 |
tcagaggagttagaatgcaatagttattgccttaataatctgcagattgtgaatatccatgttagagctggttctcagcatgcaatgagtttgatacggt |
35747918 |
T |
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| Q |
199 |
tcatacttgcaaattcctcgtcattaaagactcttacttttgaagtt |
245 |
Q |
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| T |
35747917 |
tcatacttgcaaattctacatcattaaggactcttacttttaaagtt |
35747871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 35746106 - 35746054
Alignment:
| Q |
182 |
aatgagtttgatacggttcatacttgcaaattcctcgtcattaaagactctta |
234 |
Q |
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| T |
35746106 |
aatgagtttgatacggttcatacttgtaaattccacatcattaaagactctta |
35746054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 35741527 - 35741465
Alignment:
| Q |
177 |
catgcaatgagtttgatacggttcatacttgcaaattcctcgtcattaaagactcttactttt |
239 |
Q |
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| T |
35741527 |
catgcaatgagtttgatacgtttcatacttgcaaattctacatcgttaaggactcttactttt |
35741465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 35737339 - 35737276
Alignment:
| Q |
177 |
catgcaatgagtttgatacggttcatacttgcaaattcctcgtcatt-aaagactcttactttt |
239 |
Q |
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|||||||||||||||| |||||||||||||||||||||| | || || ||||||| |||||||| |
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| T |
35737339 |
catgcaatgagtttgagacggttcatacttgcaaattccacatcgttaaaagacttttactttt |
35737276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 16866511 - 16866642
Alignment:
| Q |
105 |
gagttagaatgcaatagttgttgtcttagtcaacttcagactgtgaatatcagagttggaaccaggtttaaacatgcaatgagtttgatacggttcatac |
204 |
Q |
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|||||||| |||| ||| ||||| ||| |||||||| || ||||||||||| |||| || || |||||||||| ||||||||||| || ||||||| |
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| T |
16866511 |
gagttagagtgcagtagctgttgccttcgtcaacttttgattgtgaatatcaaagttcgatcctactttaaacatgttatgagtttgattcgtttcatac |
16866610 |
T |
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| Q |
205 |
ttgcaaattcctcgtcattaaagactcttact |
236 |
Q |
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| T |
16866611 |
ttgcaaattcctcatcgttgaagactcttact |
16866642 |
T |
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