View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15698_high_1 (Length: 621)
Name: NF15698_high_1
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 19 - 611
Target Start/End: Complemental strand, 18267629 - 18267038
Alignment:
| Q |
19 |
tgaagaccatgatggaaattcttactgtggatgctttgtttgaccgaaaacaaagagaaacatagcagtagagtctacattgtatatcaatacttacctt |
118 |
Q |
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| T |
18267629 |
tgaagaccatgatggaaattcttactgtggatgctttgtttgaccgaaaacaaagagaaacatagcagtagagtctacattgtatatcaatactttcctt |
18267530 |
T |
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| Q |
119 |
atatctctacctat--tcacaattcaccaaagacaaagaactcaccgtgcccctccccttcaccaattatggctatgacttgtcacatcatgtgtgcaaa |
216 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18267529 |
atatctctacctatattcacaattcaccaaagacaaagaactcaccgtgcccctccccttcaccaattatggctatgacttgtcacatcatgtgtgcaaa |
18267430 |
T |
|
| Q |
217 |
agaaaatactgtgaaaatgtgatgtgcgtagttgtttcatttatttcatgccgtctatgcacaagtcttggacgttctaggattgtttcataacactgca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18267429 |
agaaaatactgtgaaaatgtgatgtgcgtagttgtttcatttatttcatgccgtctatgcacaagtcttggacgtactaggattgtttcataacactgca |
18267330 |
T |
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| Q |
317 |
tatgactagtgtagtgtaattcttctggatgaaataatgttagttagggttaatggtgatgttaattaataccttgagatactagtcaaggaaaacaaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18267329 |
tatgactagtgtagtgtaattcttctggatgaaagaatg-taattagggttaagggtgatgttagttaataccttgagatactagtcaaggaaaacaaaa |
18267231 |
T |
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| Q |
417 |
gtagaaaataatctattgaaaagagtattgtttaaactttaatctatttaactagaatctttatcgttaataatattgttataattttatttcaaaagta |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18267230 |
gtagaaaataatctattgaaaagagtattgtttaaactttaatctatttaactagaatctttatcgttaataatattgttataattttttttcaaaagta |
18267131 |
T |
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| Q |
517 |
taattgaaataatgaaaaatctgtccaacatcctctatcttcnnnnnnnnnngtaattatccaccttagacaaaaataagcaaaacccacctttg |
611 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18267130 |
taattgaaataatgaaaaatcagtccaacatcctctatcttc--aaaaaaaagtaattatccaccttagacaaaaataagcaaaacccacctttg |
18267038 |
T |
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