View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15698_high_14 (Length: 396)
Name: NF15698_high_14
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 21521315 - 21521030
Alignment:
| Q |
13 |
aatatcttcatgcaatgacatctgataaaaataaacttgtttaaatatattgaactaagctaattaacataacaatcaaattttcgaaatataatcttta |
112 |
Q |
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| T |
21521315 |
aatatcttcatgcaatgacatctgataaaaataaacttgtttaaatatattaaactaagctaattaacataacaatcaaattttcgaaatataatcttta |
21521216 |
T |
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| Q |
113 |
aaaaataaccaaaatggtaa-tatattatgaattaaccatcaagagaactataccttcacataagaaaaagcaagatagagaaggtttttaacagaaaat |
211 |
Q |
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| T |
21521215 |
aaaaataaccaaaatggtaaatatattatgaattaacc----------------------ataagaaaaagcaagatagagaaggtttttaacaaaaaat |
21521138 |
T |
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| Q |
212 |
attctcttaaatctgtttacaatggaacggaatcaatacatgatggtttggtgtagagtaaatgaatcaaatcactttcttataaattgttacacaatat |
311 |
Q |
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| T |
21521137 |
attctcttaaatctgtttacaatggaacagaatcaatacatgatggtttggtgtagagtaaatgattcaaatcactttcttgtaaattgttacacaatat |
21521038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 21536952 - 21536864
Alignment:
| Q |
13 |
aatatcttcatgcaatgacatctgataaaaataaacttgtttaaatatattgaactaagctaattaacataacaatcaaattttcgaaatata |
105 |
Q |
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| T |
21536952 |
aatatcttcatgcaatgacatctgataaaaataaacttgtttaaatatattgatctaagc----taacataacaatcaaattttcgaaatata |
21536864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 172 - 313
Target Start/End: Complemental strand, 21536802 - 21536667
Alignment:
| Q |
172 |
ataagaaaaagcaagatagagaaggtttttaacagaaaatattctcttaaatctgtttacaatggaacggaatcaatacatgatggtttggtgtagagta |
271 |
Q |
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| T |
21536802 |
ataagaaagagcaagatagagaaggttgttaacataaaatat-ctctgaaatttgtatacaaaggaagggaatcaatccatgatggt-----gtagagta |
21536709 |
T |
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| Q |
272 |
aatgaatcaaatcactttcttataaattgttacacaatatga |
313 |
Q |
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| T |
21536708 |
aatgaatggaatcactttcttgtaaactggtacacaatatga |
21536667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 21536869 - 21536824
Alignment:
| Q |
131 |
aatatattatgaattaaccatcaagagaactataccttcacataag |
176 |
Q |
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| T |
21536869 |
aatatattatgaattaagcatcaagagaaatatacctccatataag |
21536824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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