View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15698_high_17 (Length: 346)
Name: NF15698_high_17
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 18578471 - 18578181
Alignment:
| Q |
19 |
ctttcttcccctgaaaaacaaatacagaaagaaagcatggccaaaagtaagtaataatgaagtgtagaaagaatgaatataattcataaggatgaagagg |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18578471 |
ctttcttcgcctgaaaaacaaatacagaaagaaagcatggccaaaagtaagtaataatgaagtgtagaaagaatgaatatgattcataaggatgaagagg |
18578372 |
T |
|
| Q |
119 |
tcacactttaacattgtcaataagttcataagaatgataaacatgagttggttcaattttaaacttttgatccattttttatttcttattgcactgaact |
218 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18578371 |
tcacacttcaacattgtcaatcagttcataagaatgataaacatgagttgtttcaattttaaacttttgatccattttttatttcttattgcaatgaact |
18578272 |
T |
|
| Q |
219 |
cttaagcgtaaaatgtttttaagcatcaaatgtttatgggcagttgcaaaagctcattatcatgaaatataaaatttgcaaatgttgtaaa |
309 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18578271 |
cttaagcgtaaaatgtttttaagcgtcaaatgtttatggacagttgcaaaagctcattatcatgaaatataaaatttgcaaatgttgtaaa |
18578181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 30495992 - 30496095
Alignment:
| Q |
19 |
ctttcttcccctgaaaaacaaatacagaaagaaagcatggccaaaagtaagtaataatgaagtgtagaaagaatgaatataattcataaggatgaagagg |
118 |
Q |
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|||||||||||||||||||||| ||||||||||| | || |||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30495992 |
ctttcttcccctgaaaaacaaagacagaaagaaatcttgaccaa--gtaagcagtaatgaagtgtagaaagaatgaatataattcataacgatgaagagg |
30496089 |
T |
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| Q |
119 |
tcacac |
124 |
Q |
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|||||| |
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| T |
30496090 |
tcacac |
30496095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 30536335 - 30536438
Alignment:
| Q |
19 |
ctttcttcccctgaaaaacaaatacagaaagaaagcatggccaaaagtaagtaataatgaagtgtagaaagaatgaatataattcataaggatgaagagg |
118 |
Q |
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|
|||||||||||||||||||||| ||||||||||| | || |||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30536335 |
ctttcttcccctgaaaaacaaagacagaaagaaatcttgaccaa--gtaagcagtaatgaagtgtagaaagaatgaatataattcataacgatgaagagg |
30536432 |
T |
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| Q |
119 |
tcacac |
124 |
Q |
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|||||| |
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| T |
30536433 |
tcacac |
30536438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 10340507 - 10340217
Alignment:
| Q |
19 |
ctttcttcccctgaaaaacaaatacagaaagaaagcatggccaaaagtaagtaataatgaagtgtagaaagaatgaatataattcataaggatgaagagg |
118 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10340507 |
ctttcttcctctgaaaaacaaattcagaaagaaagcatggccaaaagtaagtaataatgaagtgtagaaagaatgactataattcataaggatgaagagg |
10340408 |
T |
|
| Q |
119 |
tcacactttaacattgtcaataagttcataagaatgataaacatgagttggttcaattttaaacttttgatccattttttatttcttattgcactgaact |
218 |
Q |
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|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10340407 |
tcacacttcaacattgtcaatcagttcataagaatgataaacatgagttggttcaattttaaacttttgatccattttttatttcttattgcaatgaact |
10340308 |
T |
|
| Q |
219 |
cttaagcgtaaaatgtttttaagcatcaaatgtttatgggcagttgcaaaagctcattatcatgaaatataaaatttgcaaatgttgtaaa |
309 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10340307 |
cttaagcgtaaaatgtttttaagcgtcaaatgtttatggacagttgcaaaagctcattatcatgaaatataaaatttgcaaatgctgtaaa |
10340217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 238 - 309
Target Start/End: Complemental strand, 29171625 - 29171554
Alignment:
| Q |
238 |
taagcatcaaatgtttatgggcagttgcaaaagctcattatcatgaaatataaaatttgcaaatgttgtaaa |
309 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||| ||||| |
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| T |
29171625 |
taagcgtcaaatgtttatggacagttgcaaaagctcactatcatgaaatataaattttgcaaatgtcgtaaa |
29171554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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