View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15698_high_2 (Length: 560)
Name: NF15698_high_2
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 10 - 509
Target Start/End: Original strand, 10561636 - 10562137
Alignment:
| Q |
10 |
agcaaaggtggtagggacagttctatgtattggtggagcggtagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggttcattgg |
109 |
Q |
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| T |
10561636 |
agcaaaggtggtagggacagttctatgtattggtggagcggtagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggttcattgg |
10561735 |
T |
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| Q |
110 |
aattatgcagagaaacttgaacatggtcatcttaacttctctgctgcccaatcaacctcgcttctaggccctgtgctcttaattcttaatgctcttgttt |
209 |
Q |
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| T |
10561736 |
agttatgcagagaaacttgaacatggtcatcttaacttctctgctgcccaatcaacctcacttctaggccctgtgctcttaattcttaatgctcttgttt |
10561835 |
T |
|
| Q |
210 |
ggtcactatggtttatcattcaagtaagcatcatatgcatcatgcattatattagtatcatacaacaattagggtttagggttgagctaagggattaaag |
309 |
Q |
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| T |
10561836 |
ggtcactatggtttatcattcaagtaagcatcatatgcatcatgcattatattaatatcatacaacatttagggtttagggctgagctaagggattaaag |
10561935 |
T |
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| Q |
310 |
atctaaggagttaggtttagggttcgaatcttaacgaggaaaatgatccctataaaaatccaaaactaatctcatttcttagttgcaacattttccatta |
409 |
Q |
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| T |
10561936 |
agttaaggagttaggtttagggttcgaatcttaacgaggaaaacgatccctataaaaatccaaaattaatctcaattcttagtcgcaacattttccatta |
10562035 |
T |
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| Q |
410 |
gcatttttaagaat-aaaaaatgcttacgg-aaattttacaaaaactaaaataggtgatggtaaatattactggacaaaaaattcttacggaaaatttta |
507 |
Q |
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| T |
10562036 |
gcatttttaataataaaaaaatgcttatggaaaattttacaaaaactaaaaaagttgatggaaaatattattggactaaaaatgctgatggaaaatttta |
10562135 |
T |
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| Q |
508 |
ca |
509 |
Q |
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| T |
10562136 |
ca |
10562137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 45936283 - 45936516
Alignment:
| Q |
10 |
agcaaaggtggtagggacagttctatgtattggtggagcggtagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggttcattgg |
109 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||| || || |||||||||| || | | ||||||||| | |||| ||||||| |||||||| |
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| T |
45936283 |
agcaaaagtggtagggacagttctatgtgttggtggagcgatacttctatcattttaccatggacaagtaattggtataccagaatcaaaaattcattgg |
45936382 |
T |
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| Q |
110 |
aattatgcagagaaacttgaacatggtcatcttaacttctctgctgcccaatc----aacctcgcttctaggccctgtgctcttaattcttaatgctctt |
205 |
Q |
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| T |
45936383 |
agttatgctgagagaattgaaggagctggtgataactcctctgctgcccaatctaataatgt-gcttctaggccctattctcttaattctcagtgctctt |
45936481 |
T |
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| Q |
206 |
gtttggtcactatggtttatcattcaagtaagcat |
240 |
Q |
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| T |
45936482 |
atttggtcactatggttcatcattcaagtaagcat |
45936516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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