View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15698_high_3 (Length: 533)
Name: NF15698_high_3
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 514
Target Start/End: Original strand, 35928180 - 35928675
Alignment:
| Q |
18 |
atatgggttacggtatagtgttttgccgtcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgta |
117 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35928180 |
atattggttacggtatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgta |
35928279 |
T |
|
| Q |
118 |
agtttcaaacattatgttgtcagaatcaaagctgtcaaactcgagagttaggtaaatttgtttatcttttgtccactcaactcgttaacttgcta--gta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||| |
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| T |
35928280 |
agtttcaaacattatgttgtcagaatcaaagctgtcaaactcgagagttaggtaaatttgtttatctttggtcgactcaactctttaacttgctatagta |
35928379 |
T |
|
| Q |
216 |
aaatcaaatgtttatctagatttaattagagtttaccagaactcataagagttcactataaaaggaggagtattcatgtgaggtagttcgtttttatgac |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35928380 |
aaatcaaatgtttatctagatttaattagagtttaccggaactcataagagttcactataaaagga---gtattcatgtgaggtagttcgtttttatgac |
35928476 |
T |
|
| Q |
316 |
tcgtaattgtaaattcgtaaaagatttcttgaggtttttctaaccatgatcaaaatcatttcatcaagaggtaagtttagatcatgatgctcaaaataaa |
415 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35928477 |
tcataattgtaaattcgtaaaagatttctcgaggtttttctaaccatgatcaaaatcatttcatcaagaggtaagtttagatcatgatgctcaaaataaa |
35928576 |
T |
|
| Q |
416 |
ttaataaccaggttgcactatgttctttcattttcaatatgaaaataatattttgttcttatgtaaaaatgtgctaccctaccatgtttgactactatg |
514 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35928577 |
ttaataaccaggtttcactatgttctttcattttcaatataaaaataatattttgttcttatgtaaaaatgtgctaccctaccatgtttgactactatg |
35928675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 35910788 - 35910924
Alignment:
| Q |
18 |
atatgggttacggtatagtgttttgccgtcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgta |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35910788 |
atatgggttacggtatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgtg |
35910887 |
T |
|
| Q |
118 |
agtttcaaacattatgttgtcagaatcaaagctgtca |
154 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
35910888 |
agtttcaaacattatgttgtcagaatcaaagctgtca |
35910924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 35921586 - 35921733
Alignment:
| Q |
18 |
atatgggttacggtatagtgttttgccgtcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgta |
117 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||| |||||||||||| ||||||| |||||||||||| |||||||||||||| ||||||||||| |
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| T |
35921586 |
atatgggttacggtataatgttttgccatcagagttgactctgaagggtccgagctcctcaaaggctccatatcccagtgaggaacaaccaggtcctgtg |
35921685 |
T |
|
| Q |
118 |
agtttcaaacattatgttgtcagaatcaaagctgtcaaactcgagagt |
165 |
Q |
| |
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|||||||||||||||| ||||| ||| |||||| |||||| |||||| |
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|
| T |
35921686 |
agtttcaaacattatgatgtcaaaattgaagctgacaaacttgagagt |
35921733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 35915215 - 35915361
Alignment:
| Q |
18 |
atatgggttacggtatagtgttttgccgtcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgta |
117 |
Q |
| |
|
||||||||| ||||||| |||||| || ||||| |||| |||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||| |
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|
| T |
35915215 |
atatgggttgcggtataatgtttttccatcagaattgactctgaagggtccgagctcttgaaaggctccatatcccagtgaggaacaaccaggtcctgcg |
35915314 |
T |
|
| Q |
118 |
agtttcaaacattatgttgtcagaatcaaagctgtcaaactcgagag |
164 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||||||||||||| |
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|
| T |
35915315 |
agtttcaaacattatgttgtcaaaatcgaagctttcaaactcgagag |
35915361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 35934996 - 35935205
Alignment:
| Q |
18 |
atatgggttacggtatagtgttttgccgtcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgta |
117 |
Q |
| |
|
|||| |||||||||||| |||||| || |||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
35934996 |
atattggttacggtataatgtttttccatcagagttgactctgaagggtcctagctcctcaaaggctccatacccaagtgaagaacagccaggtcctgtg |
35935095 |
T |
|
| Q |
118 |
agtttcaaacattatgttgtcagaatcaaagctgtcaaactcgagagt-taggtaaatttgtttatcttttgtccactcaactcgttaacttgctagtaa |
216 |
Q |
| |
|
|||||||| |||||||| |||| |||||| | |||||||| ||||| |||||||| ||| || ||| ||| |||| |||| | ||||| |||||| |
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|
| T |
35935096 |
tgtttcaaatattatgttatcagcatcaaatttttcaaactctagagtctaggtaaacatgtgtagcttctgtagactcgactcatatacttgttagtaa |
35935195 |
T |
|
| Q |
217 |
aatcaaatgt |
226 |
Q |
| |
|
|||||||||| |
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|
| T |
35935196 |
aatcaaatgt |
35935205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 35940565 - 35940685
Alignment:
| Q |
18 |
atatgggttacggtatagtgttttgccgtcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgta |
117 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
35940565 |
atatgggttacggtatagtgtttttccatcagagttgactctgaagggtccgagctcctgaaaggctccatacccaagtgaagaacagccaggtcctgtg |
35940664 |
T |
|
| Q |
118 |
agtttcaaacattatgttgtc |
138 |
Q |
| |
|
| |||||||||||||||||| |
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|
| T |
35940665 |
tggttcaaacattatgttgtc |
35940685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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