View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15698_high_4 (Length: 501)
Name: NF15698_high_4
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 9091760 - 9091279
Alignment:
| Q |
1 |
taacactaacttcaacataaggttttaattttttggcaggcaaacatgtatacaatgagagagctgattagtaacgatcgaaagtcagataatgtaaaca |
100 |
Q |
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| T |
9091760 |
taacactaacttcaacataaggttttaattttttggcaggcaaacatgtatacaatgagagagctgattagtaacgatcgaaaatcagataatgtaaaca |
9091661 |
T |
|
| Q |
101 |
aaagtaaggattaagtctaagagaaaccacagattatcaagaaaaagataaagccaaaaattatttactgcattgcatattacacgtaccgtgttatagt |
200 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9091660 |
aaagtaaggattaagtctaagaaaaaccaaagattatcaagaaaaagataaagccaaaaattatttactgcattgtatattacacgtaccgtgttatagt |
9091561 |
T |
|
| Q |
201 |
ctaattgatgttataaaatcttacaagttgagtatgtcatactcttgcaagagagataatgcaacgataaatcagaatcatgcacacatactctgtagat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9091560 |
ctaattgatgttataaaatcttacaagttgagtatgtcatactcttgcaagagagataatgcaacgataaatcagaatcatgcacacatactctgtagat |
9091461 |
T |
|
| Q |
301 |
gatcctcaatccactaaattttcaatatttcacgaactatttaaaagtaatctgtctttgaaaatataaaacttaccggaatgatttgagtgctgtaacg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9091460 |
gatcctcaatccactaaattttcaatatttcacgaactatttaaaagtaatctgtctttgaaaatataaaacttaccggaatgatttgagtgctgtaacg |
9091361 |
T |
|
| Q |
401 |
cgcccaaataaatccgctacccatgacagctgtattgaaaacaaaaggaatcagcaaagcataaatcgaaataaaacccaat |
482 |
Q |
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| T |
9091360 |
cgcccaaataaatccgctacccatgacagctgtgttgaaaacaaaaggaatcagcaacgcatagatcgaaataaaacccaat |
9091279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 170 - 265
Target Start/End: Complemental strand, 9095737 - 9095642
Alignment:
| Q |
170 |
gcattgcatattacacgtaccgtgttatagtctaattgatgttataaaatcttacaagttgagtatgtcatactcttgcaagagagataatgcaac |
265 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9095737 |
gcattgcatattacatgtaccatgttatagtctaattgatgttacagaatcttacaagttgagtatgtgatactcttgcaagagagataatgcaac |
9095642 |
T |
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