View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15698_high_7 (Length: 455)
Name: NF15698_high_7
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 368
Target Start/End: Complemental strand, 21018991 - 21018628
Alignment:
| Q |
11 |
cacagaaaatgagcccaaagattatgcggtgttataaagttaaattgaagccactgcataaccttttgccacaacctcgtaaccacctcgcaacttaaga |
110 |
Q |
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| T |
21018991 |
cacagaaaatgagcccaaagattatgcggtgttataaaattaaattgaagccactgcataaccttttgccacaacctcgtaaccaccttgcaatgtaaga |
21018892 |
T |
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| Q |
111 |
agaggtgcaa------cgccgtttcctccaaccttccacaaaaaacacaagtctttgatgcatccgcatttaaaacacccctaatccctaatttcaccgt |
204 |
Q |
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| T |
21018891 |
agaggtgcaagtgcaacgccgtttcctccaaccttccaaaaaaaacacaagtctttgatgcatccgcattcaaaacacccctaatcgctagattcaccct |
21018792 |
T |
|
| Q |
205 |
tgttggtatacagtcaagtaacaaagtccacgcaaaagctaacactttagacggcacccgacatctccaaagataaccaaacacatgctcctcatcttcg |
304 |
Q |
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| T |
21018791 |
tatcggtatacggtcaagtaacaaagtccaagcaaaagctaacactttagacggcacccgacacctccaaagatcaccaaacacacgctcctcatcttcg |
21018692 |
T |
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| Q |
305 |
gataaattaacatcgatcaaaaacagcctctcaagaagcttataacacgagttcaccgagaaaa |
368 |
Q |
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| T |
21018691 |
gataaattaacatcgatcaaaaacagcctctcaagaagcttataacacgagttcaccgagaaaa |
21018628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 217 - 367
Target Start/End: Complemental strand, 16744201 - 16744051
Alignment:
| Q |
217 |
gtcaagtaacaaagtccacgcaaaagctaacactttagacggcacccgacatctccaaagataaccaaacacatgctcctcatcttcggataaattaaca |
316 |
Q |
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| T |
16744201 |
gtcaagtaacaacgttcaagcaaaagctaacactttagacggagcgcgacacttccaaagaccaccaaacacacactcctcatctccggataaattatcc |
16744102 |
T |
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| Q |
317 |
tcgatcaaaaacagcctctcaagaagcttataacacgagttcaccgagaaa |
367 |
Q |
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| T |
16744101 |
tcaatcaaaaatagtctctcaagtagcttacgatacgagttcaccgagaaa |
16744051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 337
Target Start/End: Original strand, 2516987 - 2517199
Alignment:
| Q |
125 |
gtttcctccaaccttccacaaaaaacacaagtctttgatgcatccgcatttaaaacacccctaatccctaatttcaccgttgttggtatacagtcaagta |
224 |
Q |
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| T |
2516987 |
gtttcctccatcctcccacaaaacacacaactcttcgatgcatccgcgttcaaaactccttgaatagctagattcaccctcgtcggaatgcggtcaagta |
2517086 |
T |
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| Q |
225 |
acaaagtccacgcaaaagctaacactttagacggcacccgacatctccaaagataaccaaacacatgctcctcatcttcggataaattaacatcgatcaa |
324 |
Q |
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| T |
2517087 |
acaatgtccaagcgaatgctagccctttaaacggagccccactcttccgaaggccaccaaacacaagctcctcgtcttcggataaattaccatccaacaa |
2517186 |
T |
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| Q |
325 |
aaacagcctctca |
337 |
Q |
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| ||| ||||||| |
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| T |
2517187 |
atacaacctctca |
2517199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 23293457 - 23293509
Alignment:
| Q |
127 |
ttcctccaaccttccacaaaaaacacaagtctttgatgcatccgcatttaaaa |
179 |
Q |
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||||||| ||||||||| || |||||| |||| ||||||||||||||||||| |
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| T |
23293457 |
ttcctccctccttccacacaacacacaattcttcgatgcatccgcatttaaaa |
23293509 |
T |
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