View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15698_low_11 (Length: 423)
Name: NF15698_low_11
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 157 - 413
Target Start/End: Complemental strand, 53107736 - 53107478
Alignment:
| Q |
157 |
gatagttacttacatcgcacacaagcctagctcaaatagnnnnnnnnnnnnnnnnnaaatgacaaaggttagtagttattttgttaaattaatatttact |
256 |
Q |
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| T |
53107736 |
gatagttacttacatcgcacacaagcctagctcaaatag--tttttttttttttttaaatgacaaaggttagtagttattttgttaaattaatatttact |
53107639 |
T |
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| Q |
257 |
acttcacccggatttgaacgtaatatcttcaactgctttaccctttgttcaaaggagttgagct----acccaacccatcactggttcaaattgctactt |
352 |
Q |
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| T |
53107638 |
acttcacccggatttgaacgtaatatcttcaacttcttttccctttgttcaaaggagttgagctacccacccaacccctcactggttcaaattgctactt |
53107539 |
T |
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| Q |
353 |
tctgnnnnnnnctacaatgaggtgaatttgttaatattggtatggtcaatgggtgcctttg |
413 |
Q |
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| T |
53107538 |
tctgtttttttctacaatgaggtgaatttgttaatattggtatggtcaatgggtgcctttg |
53107478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 53107843 - 53107746
Alignment:
| Q |
29 |
ttggagactgcaaggttgatatttttccctatatttgatttcaggaacttgaggaattcaagatgatcagaaaaccaaataaacagtgaacaaaagaa |
126 |
Q |
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| T |
53107843 |
ttggagactgcaaggttgatatttttccctatatttgatttcaggaacttgaggaattcaagatgatcagaaaaccaaataaacagtgaacaaaagaa |
53107746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 53125638 - 53125585
Alignment:
| Q |
47 |
atatttttccctatatttgatttcaggaacttgaggaattcaagatgatcagaaa |
101 |
Q |
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| T |
53125638 |
atatttttccctacatt-gatttcaggaacttgagaaattcaagatgatcagaaa |
53125585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 256
Target Start/End: Original strand, 39735398 - 39735440
Alignment:
| Q |
214 |
aatgacaaaggttagtagttattttgttaaattaatatttact |
256 |
Q |
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| T |
39735398 |
aatgacaaatgttagtagttagtttgttatattaatatttact |
39735440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 256
Target Start/End: Original strand, 14798221 - 14798263
Alignment:
| Q |
214 |
aatgacaaaggttagtagttattttgttaaattaatatttact |
256 |
Q |
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|||| |||||||||||||||| ||||||| ||||||||||||| |
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| T |
14798221 |
aatggcaaaggttagtagttaatttgttagattaatatttact |
14798263 |
T |
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