View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15698_low_12 (Length: 422)
Name: NF15698_low_12
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 411
Target Start/End: Complemental strand, 44945797 - 44945401
Alignment:
| Q |
16 |
gcaaattccacatgtcgtgattcctcaggaatgcgtttttgaggctgcttctgttttgagaattgaaattaaccaagttttcgctattttgagggaaatt |
115 |
Q |
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| T |
44945797 |
gcaaattccacatgtcgtgattcctcaggaatgcgtttttgaggctgcttctgttttgagaattgaaattaaccaagttttcgctattttgagggaaatt |
44945698 |
T |
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| Q |
116 |
ggaactgggagagatatcaagaagtttcttaccgtaagttgttccatctttcatccacacacaaagctatgctttaagcttgaatcatatccattcatat |
215 |
Q |
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| T |
44945697 |
ggaactgggagagatatcaagaagtttcttaccgtaagttgttccgtctttcatccacacacaaagctatgctttaagcttgaatcatatccattcatat |
44945598 |
T |
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| Q |
216 |
caaattcaattttattttccattttgcaatgtgatttagatagcctagtaggactaaggtgnnnnnnngtcctgttatcaggttattgctggattgtggt |
315 |
Q |
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| T |
44945597 |
caaattcaattttattttccattttgcaatgtgatttagatagcctagtaggactaaggtgtttttttgtcctgttatcaggttattgctggattgtggt |
44945498 |
T |
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| Q |
316 |
ttatctcagttattgggagctgcttcaatttcttgacattgttttatatatgtaagtgttcatgcttcaaattccatta-tcttctcaatgttgcct |
411 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44945497 |
ttatttcagttattgggagctgcttcaatttcttgacattgttttatatatgtaagtgttcatgcttcaaattccattattcttctcaatgttgcct |
44945401 |
T |
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