View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15698_low_13 (Length: 413)
Name: NF15698_low_13
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 55178906 - 55179248
Alignment:
| Q |
19 |
atcttgatgacactttcatctcttctttaaatgtttcttcctcccattttctgttaccttcttggcttttcgatttctcatcctcattctccgagtggtc |
118 |
Q |
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| T |
55178906 |
atcttgatgacactttcatttctcctttaaatgtttcttcctcccattttctgttaccttcttggcttttcgatttctcatcctcattctctgagtggtc |
55179005 |
T |
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| Q |
119 |
tgtgccagatgcagactggaccaccgtgctgataagactcggtctaggatcctctataatgccacttagcataatcatattcatagttggaaacaaattt |
218 |
Q |
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| T |
55179006 |
tgtgccagatgcagactggaccaccgtgctgataagactcggtctaggatcctctataatgccacctagcataatcatattcatagttggaaacaaattt |
55179105 |
T |
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| Q |
219 |
gctatagtagattttctttgagagcaaaaagaaaactaaaacacgttccctataatataaaaacaagacacacgtgcatgaatgtgatac-----aatat |
313 |
Q |
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| T |
55179106 |
gctatagtagattttctttgagagcaaaaagaaaactaaaacacgttccctataatataaaaacaagacacacgtgcatgaatgtgatacaatataatat |
55179205 |
T |
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| Q |
314 |
aatataatattatatactaccaaattaaccaaacctattagtt |
356 |
Q |
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| T |
55179206 |
aatataatattatatactaccaaattaaccaaacctattagtt |
55179248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 399
Target Start/End: Original strand, 55179231 - 55179263
Alignment:
| Q |
367 |
taaccaaacctattagttgtttattatctgtgc |
399 |
Q |
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| T |
55179231 |
taaccaaacctattagttgtttattatctgtgc |
55179263 |
T |
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