View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15698_low_14 (Length: 399)
Name: NF15698_low_14
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 209 - 385
Target Start/End: Complemental strand, 45044026 - 45043850
Alignment:
| Q |
209 |
tcaaaccctaatgaaataaactgataaatcttgagaaaaatcaattaaagcgattaaattgagttattaattgtatacttgtagccnnnnnnntgtctaa |
308 |
Q |
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| T |
45044026 |
tcaaaccctaatgaaataaactgataaatcttgagaaaaatcaattaaagcgattaaattgagttattagttgtatacttgtagccaaaaaaatgtctaa |
45043927 |
T |
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| Q |
309 |
cattttatgttctgtaattggtctatgcaaatcgatttattgatttgttattattttacttacattttaatcatatt |
385 |
Q |
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| T |
45043926 |
cattttatggtctgtaattggtctatgcaaatcgatttattgatttgttaatattttacttacattttaatcatatt |
45043850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 45044193 - 45044075
Alignment:
| Q |
20 |
caatttacatcgaaattacatttattttgatctaaacaaagcctaaattaatctctaaatcaattaatcaatttatatcaaaataagattattttgatct |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45044193 |
caatttacatcgaaattacatttattttgatctaaacaaagcctaaattaatctctaaatcaattaatcaatttatatcgaaataagattattttgatct |
45044094 |
T |
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| Q |
120 |
aaaaaaccctaaatagatg |
138 |
Q |
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| T |
45044093 |
aaaaaaccctaaatagatg |
45044075 |
T |
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