View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15698_low_16 (Length: 384)
Name: NF15698_low_16
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 48 - 374
Target Start/End: Complemental strand, 17386529 - 17386204
Alignment:
| Q |
48 |
acacatgtagttacattcaatcatttccattttcataaattgttgctaatgtatgtggtgtgtgacgtgtccgcgt-ttggtttgtgattcattggttga |
146 |
Q |
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| T |
17386529 |
acacatgtagttacattcaatcatttccattttcataaattgttgctagtgtatgtggtgtgtgaggtgtccgcatcttggtttgtgattcataggttga |
17386430 |
T |
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| Q |
147 |
cttaatggtctaatgtttctaatgtaacactgtgacatgagagtcagtgattcttattcattttgttgtgtttaatctagaatttggtagatatttgttg |
246 |
Q |
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| T |
17386429 |
cttaatggtctaatgtctctaatgtaacactgtgacatgag--tcagtgattcttattcattttgttgtgtttaatctagaatttggtagatatttgttg |
17386332 |
T |
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| Q |
247 |
ctgttttagtattatgtgaaccaaactggaattgaaaattttggactttttgattttgctagttttgttgtgtattatagtcatggtattacaaatattg |
346 |
Q |
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| T |
17386331 |
ctgttttagtattatgtgaaccaaactggaattgaaaattttggactttttgattttgctagttttgttgtgtattatagtcatggtattacaaatattg |
17386232 |
T |
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| Q |
347 |
aattaggtgtttgtactctttccctttg |
374 |
Q |
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| T |
17386231 |
aattaggtgtttgtactctttccctttg |
17386204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 17386599 - 17386556
Alignment:
| Q |
8 |
tgatgttcttgtctgtggagtgcttgatagccggtttctgacac |
51 |
Q |
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| T |
17386599 |
tgatgttcttgtctgtgcagtgcttcatagccggtgtctgacac |
17386556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 16567349 - 16567301
Alignment:
| Q |
45 |
ctgacacatgtagttacattcaatcatttccattttcataaattgttgc |
93 |
Q |
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| T |
16567349 |
ctgacacatgtggttacattcaatcatttccattttcttaaattattgc |
16567301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 5739644 - 5739610
Alignment:
| Q |
47 |
gacacatgtagttacattcaatcatttccattttc |
81 |
Q |
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| T |
5739644 |
gacacatgtacttacattcaatcatttccattttc |
5739610 |
T |
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