View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15698_low_17 (Length: 381)

Name: NF15698_low_17
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15698_low_17
NF15698_low_17
[»] chr7 (13 HSPs)
chr7 (24-176)||(43404866-43405018)
chr7 (237-370)||(43407911-43408043)
chr7 (99-149)||(20421726-20421776)
chr7 (97-148)||(36114307-36114357)
chr7 (100-148)||(6441296-6441343)
chr7 (100-148)||(18503448-18503496)
chr7 (99-135)||(37710152-37710188)
chr7 (99-148)||(10901699-10901748)
chr7 (97-130)||(21402793-21402826)
chr7 (99-148)||(43159315-43159364)
chr7 (102-134)||(28735196-28735228)
chr7 (100-128)||(40200790-40200818)
chr7 (97-149)||(42433057-42433109)
[»] chr2 (8 HSPs)
chr2 (93-146)||(13528682-13528735)
chr2 (99-148)||(15939343-15939392)
chr2 (95-148)||(25067268-25067321)
chr2 (103-147)||(13424056-13424100)
chr2 (97-148)||(33549019-33549070)
chr2 (99-148)||(11268343-11268392)
chr2 (99-128)||(14518358-14518387)
chr2 (97-145)||(11189985-11190033)
[»] chr5 (11 HSPs)
chr5 (97-147)||(8752513-8752563)
chr5 (99-147)||(885125-885173)
chr5 (97-148)||(8241104-8241155)
chr5 (97-148)||(18597463-18597513)
chr5 (102-148)||(5195115-5195161)
chr5 (99-148)||(3741008-3741057)
chr5 (97-130)||(6167284-6167317)
chr5 (97-142)||(18473867-18473912)
chr5 (75-128)||(38097347-38097400)
chr5 (97-148)||(25460745-25460797)
chr5 (100-148)||(37104124-37104172)
[»] chr8 (13 HSPs)
chr8 (99-148)||(8183374-8183423)
chr8 (99-144)||(6355727-6355772)
chr8 (99-148)||(37708745-37708794)
chr8 (97-148)||(3227288-3227339)
chr8 (97-148)||(5328532-5328583)
chr8 (97-148)||(21548462-21548513)
chr8 (99-150)||(44053407-44053458)
chr8 (102-148)||(24517349-24517395)
chr8 (97-147)||(33318048-33318097)
chr8 (99-148)||(13105145-13105194)
chr8 (99-148)||(31024348-31024397)
chr8 (99-127)||(30300404-30300432)
chr8 (100-148)||(36540341-36540389)
[»] chr3 (17 HSPs)
chr3 (99-148)||(15085651-15085700)
chr3 (99-148)||(41253716-41253765)
chr3 (100-134)||(16991904-16991938)
chr3 (93-148)||(47664822-47664875)
chr3 (97-147)||(42334092-42334142)
chr3 (99-148)||(8488481-8488530)
chr3 (98-127)||(13331925-13331954)
chr3 (97-130)||(23327867-23327900)
chr3 (99-148)||(25883955-25884004)
chr3 (99-148)||(27329899-27329948)
chr3 (99-148)||(36478155-36478204)
chr3 (97-130)||(40739176-40739209)
chr3 (99-148)||(41710637-41710686)
chr3 (99-148)||(46767397-46767446)
chr3 (99-148)||(51879149-51879198)
chr3 (95-127)||(17561159-17561191)
chr3 (97-129)||(33248929-33248961)
[»] scaffold0264 (1 HSPs)
scaffold0264 (94-134)||(13448-13488)
[»] chr4 (15 HSPs)
chr4 (99-147)||(2860699-2860747)
chr4 (99-148)||(30305853-30305902)
chr4 (100-148)||(3039177-3039225)
chr4 (97-148)||(624534-624585)
chr4 (97-148)||(11375854-11375905)
chr4 (99-134)||(47586286-47586321)
chr4 (97-148)||(54215815-54215866)
chr4 (98-147)||(4513406-4513455)
chr4 (99-148)||(36099150-36099199)
chr4 (99-148)||(50376617-50376665)
chr4 (100-148)||(2870938-2870985)
chr4 (97-125)||(21432691-21432719)
chr4 (99-127)||(32898512-32898540)
chr4 (97-146)||(33455991-33456042)
chr4 (103-147)||(45665002-45665046)
[»] scaffold0370 (2 HSPs)
scaffold0370 (99-146)||(10450-10497)
scaffold0370 (99-146)||(15740-15787)
[»] chr6 (9 HSPs)
chr6 (99-146)||(31980926-31980973)
chr6 (100-148)||(6196317-6196365)
chr6 (97-148)||(361217-361268)
chr6 (97-146)||(3298933-3298981)
chr6 (99-148)||(3709913-3709962)
chr6 (99-148)||(18904319-18904368)
chr6 (99-148)||(32142003-32142052)
chr6 (99-148)||(32621549-32621598)
chr6 (112-148)||(12524966-12525002)
[»] chr1 (9 HSPs)
chr1 (98-148)||(621631-621680)
chr1 (100-148)||(52431877-52431925)
chr1 (97-135)||(5289134-5289172)
chr1 (100-130)||(41972692-41972722)
chr1 (99-148)||(18512542-18512591)
chr1 (98-143)||(22864196-22864240)
chr1 (100-145)||(27094297-27094342)
chr1 (99-127)||(36795225-36795253)
chr1 (97-137)||(52327060-52327100)
[»] scaffold0330 (1 HSPs)
scaffold0330 (97-148)||(6822-6873)
[»] scaffold0003 (1 HSPs)
scaffold0003 (97-147)||(315704-315754)


Alignment Details
Target: chr7 (Bit Score: 121; Significance: 7e-62; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 43404866 - 43405018
Alignment:
Q  24 ttattctaaattttttattgttttaacaaaagataagatgcaattaagcatatgttttgtttggtccactggatagagctcacacattttaaatatggag 123  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||    
T  43404866 ttattctaatttttttattgttttaacaaaatataagatgcaattaagcatattttttgtttggtccagtggatagagctcacacattttaaatgtggag 43404965  T
Q  124 aagtgagatgtttggggttcgaaccaacatagttaacctttgaaataattaag 176  Q
    ||||||||||||||||||||||||||||  ||||||||||||| |||||||||    
T  43404966 aagtgagatgtttggggttcgaaccaactgagttaacctttgagataattaag 43405018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 237 - 370
Target Start/End: Original strand, 43407911 - 43408043
Alignment:
Q  237 ctaagtgaatcaagagcgagcaaatgattatataatcatctaaatttattttttcggcaaccgttttggtacatcctaaatttcatattgcttgagaatc 336  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||  |||||||||||||||||    
T  43407911 ctaagtgaatcaagagcgagcaaatgaatatataatcatctaaatttatttttt-ggcaaccgttttggtatatcctaaatcccatattgcttgagaatc 43408009  T
Q  337 gagcaaatgatagtttatatgcaacactcatatt 370  Q
    ||||||||||||||||||||||||||||||||||    
T  43408010 gagcaaatgatagtttatatgcaacactcatatt 43408043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 20421726 - 20421776
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacca 149  Q
    ||||||||||||||||||| |||||||||||||||| | ||||||||||||    
T  20421726 gagctcacacattttaaatgtggagaagtgagatgtctagggttcgaacca 20421776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 36114307 - 36114357
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    |||||||||||||||| |||| |||||||||||||| |||||||||||||||    
T  36114307 tagagctcacacattt-aaatgtggagaagtgagatatttggggttcgaacc 36114357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 6441343 - 6441296
Alignment:
Q  100 agctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  6441343 agctcacacaatttaattatggagaagtgagatg-ttggggttcgaacc 6441296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 18503448 - 18503496
Alignment:
Q  100 agctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    |||||||||||||||||| |||||||||| | ||| |||||||||||||    
T  18503448 agctcacacattttaaatgtggagaagtggggtgtctggggttcgaacc 18503496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 37710188 - 37710152
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtt 135  Q
    ||||||||||||||||||| |||||||||||||||||    
T  37710188 gagctcacacattttaaatgtggagaagtgagatgtt 37710152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 10901748 - 10901699
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||| ||||| |||||||||| | |||| ||||||||||||    
T  10901748 gagctcacacattataaatgtggagaagtggggtgttaggggttcgaacc 10901699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 130
Target Start/End: Original strand, 21402793 - 21402826
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgag 130  Q
    ||||||||||||||||||||| ||||||||||||    
T  21402793 tagagctcacacattttaaatgtggagaagtgag 21402826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 43159315 - 43159364
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||| ||||||||||| ||||||| ||||||||| |||||| |||||    
T  43159315 gagctcagacattttaaatgtggagaaatgagatgttcggggtttgaacc 43159364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 28735196 - 28735228
Alignment:
Q  102 ctcacacattttaaatatggagaagtgagatgt 134  Q
    ||||||||||||||||||||||||||| |||||    
T  28735196 ctcacacattttaaatatggagaagtgggatgt 28735228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 40200818 - 40200790
Alignment:
Q  100 agctcacacattttaaatatggagaagtg 128  Q
    |||||||||||||||||||||||||||||    
T  40200818 agctcacacattttaaatatggagaagtg 40200790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 42433057 - 42433109
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcgaacca 149  Q
    ||||||| ||||||||||||||||||||| |||  ||| || |||||||||||    
T  42433057 tagagcttacacattttaaatatggagaaatgaagtgtctgaggttcgaacca 42433109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 13528735 - 13528682
Alignment:
Q  93 tggatagagctcacacattttaaatatggagaagtgagatgtttggggttcgaa 146  Q
    |||||||||||||||||| ||||||||| ||||||||||||| |||||||||||    
T  13528735 tggatagagctcacacatattaaatatgcagaagtgagatgtctggggttcgaa 13528682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 15939392 - 15939343
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| |||||||||| | |||| ||||||||||||    
T  15939392 gagctcacacattttaaatgtggagaagtggggtgttcggggttcgaacc 15939343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 25067321 - 25067268
Alignment:
Q  95 gatagagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    |||||||||| ||||||||||||||||||||||||| ||| || |||| |||||    
T  25067321 gatagagctcgcacattttaaatatggagaagtgaggtgtctgaggtttgaacc 25067268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 13424056 - 13424100
Alignment:
Q  103 tcacacattttaaatatggagaagtgagatgtttggggttcgaac 147  Q
    ||||||||||||||| |||||||||||||||||||  ||||||||    
T  13424056 tcacacattttaaatgtggagaagtgagatgtttgatgttcgaac 13424100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 33549019 - 33549070
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||| ||||| | |||||||||||  |||||||||||||||||    
T  33549019 tagagctcacacaatttaattgtggagaagtgaagtgtttggggttcgaacc 33549070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 11268392 - 11268343
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    |||||||||||||||||||||||||||||  | |||| | ||||||||||    
T  11268392 gagctcacacattttaaatatggagaagtacggtgttcgaggttcgaacc 11268343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 128
Target Start/End: Complemental strand, 14518387 - 14518358
Alignment:
Q  99 gagctcacacattttaaatatggagaagtg 128  Q
    ||||||||||||||||||||||||||||||    
T  14518387 gagctcacacattttaaatatggagaagtg 14518358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 11190033 - 11189985
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcga 145  Q
    ||||||||||||| ||||| | |||||||||| ||||| ||||||||||    
T  11190033 tagagctcacacaatttaattgtggagaagtgggatgtctggggttcga 11189985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 8752513 - 8752563
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcgaac 147  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  8752513 tagagctcacacattttaaacgtggagaagtgagatgtgtggggttcgaac 8752563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 885125 - 885173
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaac 147  Q
    |||||||||||||||||||||||||||||||| |||| || ||||||||    
T  885125 gagctcacacattttaaatatggagaagtgaggtgttcggagttcgaac 885173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 8241155 - 8241104
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||||| |||||||||| | |||  ||||||||||||    
T  8241155 tagagctcacacattttaaatgtggagaagtggggtgtccggggttcgaacc 8241104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 18597513 - 18597463
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    |||||||||||||||||||||| ||||||||||| ||| ||||| |||||||    
T  18597513 tagagctcacacattttaaata-ggagaagtgaggtgtctgggggtcgaacc 18597463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 5195115 - 5195161
Alignment:
Q  102 ctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    |||||||||||||||||| |||||||||| ||| || ||||||||||    
T  5195115 ctcacacattttaaatatagagaagtgaggtgtctgaggttcgaacc 5195161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 3741057 - 3741008
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| |||||||||| | |||  ||||||||||||    
T  3741057 gagctcacacattttaaatgtggagaagtggggtgtccggggttcgaacc 3741008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 6167317 - 6167284
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgag 130  Q
    ||||||||||||||||||||| ||||||||||||    
T  6167317 tagagctcacacattttaaatgtggagaagtgag 6167284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 18473912 - 18473867
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggtt 142  Q
    ||||||||||||||||||||||||||||| || ||| || ||||||    
T  18473912 tagagctcacacattttaaatatggagaaatgggatattcggggtt 18473867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 38097400 - 38097347
Alignment:
Q  75 atgttttgtttggtccactggatagagctcacacattttaaatatggagaagtg 128  Q
    ||||||| ||| ||| | ||| ||||||||||||||||||||| ||||||||||    
T  38097400 atgtttttttttgtctagtggctagagctcacacattttaaatgtggagaagtg 38097347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 25460745 - 25460797
Alignment:
Q  97 tagagctcacacatttt-aaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||| |||| |||||||||| | |||| ||||||||||||    
T  25460745 tagagctcacacatttttaaatgtggagaagtggggtgttcggggttcgaacc 25460797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 37104172 - 37104124
Alignment:
Q  100 agctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||||| ||||||| ||||| |  ||||||||||    
T  37104172 agctcacacattttaaatatgaagaagtgtgatgtctaaggttcgaacc 37104124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 8183423 - 8183374
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    |||||||||||||||||||||||||||||| | ||| |||||||||||||    
T  8183423 gagctcacacattttaaatatggagaagtgggttgtctggggttcgaacc 8183374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 6355772 - 6355727
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcg 144  Q
    |||||||||||||||||||||||||||||  ||||||| |||||||    
T  6355772 gagctcacacattttaaatatggagaagtcggatgtttagggttcg 6355727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 37708794 - 37708745
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| |||||||||| |||||  ||||||||||||    
T  37708794 gagctcacacattttaaatgtggagaagtgggatgtccggggttcgaacc 37708745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 3227339 - 3227288
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||| ||||| | |||||||||| |||||| ||||||||||||    
T  3227339 tagagctcacacaatttaattgtggagaagtgggatgttcggggttcgaacc 3227288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 5328532 - 5328583
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| | |||||||||||| |||  ||||||||||||    
T  5328532 tagagctcacacattttaattgtggagaagtgaggtgtccggggttcgaacc 5328583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 21548462 - 21548513
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| | |||||||||| | |||| ||||||||||||    
T  21548462 tagagctcacacattttaattgtggagaagtggggtgttcggggttcgaacc 21548513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 44053407 - 44053458
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaaccaa 150  Q
    ||||||||||||||||||| |||||||||| | |||  ||||||||||||||    
T  44053407 gagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccaa 44053458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 24517395 - 24517349
Alignment:
Q  102 ctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| ||||||| |||| | ||||||||||||    
T  24517395 ctcacacattttaaatatgcagaagtgggatggtaggggttcgaacc 24517349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 33318048 - 33318097
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcgaac 147  Q
    ||||||||||||||||||| | |||| |||||||||||||||| |||||||    
T  33318048 tagagctcacacattttaa-tgtggaaaagtgagatgtttgggattcgaac 33318097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 13105194 - 13105145
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| |||||||||| | ||| || ||||||||||    
T  13105194 gagctcacacattttaaatgtggagaagtggggtgtctgaggttcgaacc 13105145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 31024397 - 31024348
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| |||||||||| | |||  ||||||||||||    
T  31024397 gagctcacacattttaaatgtggagaagtggggtgtccggggttcgaacc 31024348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 30300432 - 30300404
Alignment:
Q  99 gagctcacacattttaaatatggagaagt 127  Q
    |||||||||||||||||||||||||||||    
T  30300432 gagctcacacattttaaatatggagaagt 30300404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 36540389 - 36540341
Alignment:
Q  100 agctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    |||||||||| ||||| ||||||||||||   |||||||||||||||||    
T  36540389 agctcacacaatttaattatggagaagtggagtgtttggggttcgaacc 36540341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 15085651 - 15085700
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    |||||||||||||||||||||||||||||||| |||  ||||||||||||    
T  15085651 gagctcacacattttaaatatggagaagtgaggtgtccggggttcgaacc 15085700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 41253716 - 41253765
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    |||||||||||||||||||||||| ||||||| |||| ||||||||||||    
T  41253716 gagctcacacattttaaatatggaaaagtgaggtgttcggggttcgaacc 41253765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 16991938 - 16991904
Alignment:
Q  100 agctcacacattttaaatatggagaagtgagatgt 134  Q
    |||||||||||||||||||||||||||||||||||    
T  16991938 agctcacacattttaaatatggagaagtgagatgt 16991904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 47664822 - 47664875
Alignment:
Q  93 tggatagagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    |||| |||||||||||||||||||||||||||| |  |||||||| ||||||||||    
T  47664822 tggacagagctcacacattttaaatatggagaatt--gatgtttgaggttcgaacc 47664875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 42334092 - 42334142
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcgaac 147  Q
    ||||||||||||||||||||| ||||||||||  ||||| | |||||||||    
T  42334092 tagagctcacacattttaaatgtggagaagtggaatgttcgaggttcgaac 42334142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 8488530 - 8488481
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| |||||||||||| |||   |||||||||||    
T  8488530 gagctcacacattttaaatgtggagaagtgaggtgtcaagggttcgaacc 8488481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 127
Target Start/End: Complemental strand, 13331954 - 13331925
Alignment:
Q  98 agagctcacacattttaaatatggagaagt 127  Q
    ||||||||||||||||||||||||||||||    
T  13331954 agagctcacacattttaaatatggagaagt 13331925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 23327900 - 23327867
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgag 130  Q
    |||| |||||||||||||||||||||||||||||    
T  23327900 tagacctcacacattttaaatatggagaagtgag 23327867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 25883955 - 25884004
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| |||||||||| | |||  ||||||||||||    
T  25883955 gagctcacacattttaaatgtggagaagtggggtgtccggggttcgaacc 25884004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 27329899 - 27329948
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| |||||||||| | |||  ||||||||||||    
T  27329899 gagctcacacattttaaatgtggagaagtggggtgtccggggttcgaacc 27329948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 36478155 - 36478204
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||| ||| ||||||||||||||||  | ||||||||||    
T  36478155 gagctcacacatttttaatgtggagaagtgagatgtccgaggttcgaacc 36478204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 130
Target Start/End: Original strand, 40739176 - 40739209
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgag 130  Q
    |||||||||||||||||||| |||||||||||||    
T  40739176 tagagctcacacattttaaacatggagaagtgag 40739209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 41710686 - 41710637
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| |||||||||||| |||  ||| ||||||||    
T  41710686 gagctcacacattttaaatgtggagaagtgaggtgtccgggattcgaacc 41710637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 46767446 - 46767397
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| |||||||||| |||||  |||||| |||||    
T  46767446 gagctcacacattttaaatgtggagaagtgggatgtccggggtttgaacc 46767397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 51879198 - 51879149
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| |||||||||| | |||  ||||||||||||    
T  51879198 gagctcacacattttaaatgtggagaagtggggtgtccggggttcgaacc 51879149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 17561191 - 17561159
Alignment:
Q  95 gatagagctcacacattttaaatatggagaagt 127  Q
    ||||||||||||||||||||||| |||||||||    
T  17561191 gatagagctcacacattttaaatgtggagaagt 17561159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 33248961 - 33248929
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtga 129  Q
    ||||||||||||||||||||| |||||||||||    
T  33248961 tagagctcacacattttaaatgtggagaagtga 33248929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 13448 - 13488
Alignment:
Q  94 ggatagagctcacacattttaaatatggagaagtgagatgt 134  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  13448 ggatagagctcacacattttaaatatggagaagtgggatgt 13488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 2860699 - 2860747
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaac 147  Q
    |||||||||||||||||||||||||||||||||||| |  |||||||||    
T  2860699 gagctcacacattttaaatatggagaagtgagatgtctaaggttcgaac 2860747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 30305902 - 30305853
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| |||||||||||| |||  ||||||||||||    
T  30305902 gagctcacacattttaaatgtggagaagtgaggtgtccggggttcgaacc 30305853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 3039177 - 3039225
Alignment:
Q  100 agctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||| ||||    
T  3039177 agctcacacattttaaatatgaagaagtgagctgtttgggattcaaacc 3039225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 624585 - 624534
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||||| |||||||||| | |||  ||||||||||||    
T  624585 tagagctcacacattttaaatgtggagaagtggggtgtcaggggttcgaacc 624534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 11375854 - 11375905
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| | |||||||||||| |||  ||||||||||||    
T  11375854 tagagctcacacattttaattgtggagaagtgaggtgtccggggttcgaacc 11375905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 134
Target Start/End: Complemental strand, 47586321 - 47586286
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgt 134  Q
    ||||||||||||||||||| ||||||||||||||||    
T  47586321 gagctcacacattttaaatgtggagaagtgagatgt 47586286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 54215866 - 54215815
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||| ||||||||| |||||||||| | ||| |||||||||||||    
T  54215866 tagagctcacatattttaaatgtggagaagtggggtgtctggggttcgaacc 54215815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 4513406 - 4513455
Alignment:
Q  98 agagctcacacattttaaatatggagaagtgagatgtttggggttcgaac 147  Q
    |||||||||||||||||||| |||||||||||| ||  || |||||||||    
T  4513406 agagctcacacattttaaatgtggagaagtgaggtggatgaggttcgaac 4513455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 36099150 - 36099199
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| |||||||||| | |||  ||||||||||||    
T  36099150 gagctcacacattttaaatgtggagaagtggggtgtccggggttcgaacc 36099199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 50376617 - 50376665
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| |||| ||||||  |||||||||||||||||    
T  50376617 gagctcacacattttaaatgtgga-aagtgaagtgtttggggttcgaacc 50376665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 2870985 - 2870938
Alignment:
Q  100 agctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||| |||||| ||||||||| || |||||||||||||||||    
T  2870985 agctcacacatattaaatttggagaagt-aggtgtttggggttcgaacc 2870938  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 125
Target Start/End: Complemental strand, 21432719 - 21432691
Alignment:
Q  97 tagagctcacacattttaaatatggagaa 125  Q
    |||||||||||||||||||||||||||||    
T  21432719 tagagctcacacattttaaatatggagaa 21432691  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 32898540 - 32898512
Alignment:
Q  99 gagctcacacattttaaatatggagaagt 127  Q
    |||||||||||||||||||||||||||||    
T  32898540 gagctcacacattttaaatatggagaagt 32898512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 33456042 - 33455991
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtt--tggggttcgaa 146  Q
    ||||||||||||||||||||||   ||||||||||||||  |||||||||||    
T  33456042 tagagctcacacattttaaatacaaagaagtgagatgtttctggggttcgaa 33455991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 45665002 - 45665046
Alignment:
Q  103 tcacacattttaaatatggagaagtgagatgtttggggttcgaac 147  Q
    |||||||| || ||| |||||||||| ||||||||||||||||||    
T  45665002 tcacacatatttaatgtggagaagtgggatgtttggggttcgaac 45665046  T

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Target: scaffold0370 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 10450 - 10497
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaa 146  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||||    
T  10450 gagctcacacattttaaacatggagaagtgagatattcggggttcgaa 10497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0370; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 15740 - 15787
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaa 146  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||||    
T  15740 gagctcacacattttaaacatggagaagtgagatattcggggttcgaa 15787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 31980926 - 31980973
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaa 146  Q
    |||||||||||||||||| ||||||||||||| |||||||| ||||||    
T  31980926 gagctcacacattttaaacatggagaagtgaggtgtttgggattcgaa 31980973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 6196317 - 6196365
Alignment:
Q  100 agctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    |||||||||||||||||  |||||||||||||||| ||| |||||||||    
T  6196317 agctcacacattttaaacgtggagaagtgagatgtatggagttcgaacc 6196365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 361268 - 361217
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||| |||||||||||||||||||| | ||| ||| |||||||||    
T  361268 tagagctcacatattttaaatatggagaagtggggtgtctggagttcgaacc 361217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 3298933 - 3298981
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcgaa 146  Q
    |||||||||||||||| ||||||||||||||| |||||| | ||||||||    
T  3298933 tagagctcacacattt-aaatatggagaagtgggatgttcgaggttcgaa 3298981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 3709962 - 3709913
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    |||||| |||||||||||| |||||||||| | ||| |||||||||||||    
T  3709962 gagctctcacattttaaatgtggagaagtggggtgtctggggttcgaacc 3709913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 18904368 - 18904319
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| |||||||||| | |||  ||||||||||||    
T  18904368 gagctcacacattttaaatgtggagaagtggggtgtccggggttcgaacc 18904319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 32142003 - 32142052
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| |||| ||||| | ||| |||||||||||||    
T  32142003 gagctcacacattttaaatgtggaaaagtggggtgtctggggttcgaacc 32142052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 32621549 - 32621598
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| |||||||||| | ||| |||| ||||||||    
T  32621549 gagctcacacattttaaatgtggagaagtggggtgtctgggattcgaacc 32621598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 12524966 - 12525002
Alignment:
Q  112 ttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  12524966 ttaaatatggagaagtgggatgttcggggttcgaacc 12525002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 621680 - 621631
Alignment:
Q  98 agagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  621680 agagctcacacattt-aaatatggagaaatgtgatgtttggggttcgaacc 621631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 52431925 - 52431877
Alignment:
Q  100 agctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    |||||||| ||||||||| |||||||||||| ||||||||||| |||||    
T  52431925 agctcacatattttaaatgtggagaagtgaggtgtttggggtttgaacc 52431877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 5289172 - 5289134
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtt 135  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  5289172 tagagctcacatattttaaatgtggagaagtgagatgtt 5289134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 130
Target Start/End: Original strand, 41972692 - 41972722
Alignment:
Q  100 agctcacacattttaaatatggagaagtgag 130  Q
    |||||||||||||||||||||||||||||||    
T  41972692 agctcacacattttaaatatggagaagtgag 41972722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 18512542 - 18512591
Alignment:
Q  99 gagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||||||||| |||||||||| | |||  ||||||||||||    
T  18512542 gagctcacacattttaaatgtggagaagtggggtgtccggggttcgaacc 18512591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 22864240 - 22864196
Alignment:
Q  98 agagctcacacattttaaatatggagaagtgagatgtttggggttc 143  Q
    |||||||||||| || ||||||||||||||||| ||||||||||||    
T  22864240 agagctcacacaatt-aaatatggagaagtgaggtgtttggggttc 22864196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 27094297 - 27094342
Alignment:
Q  100 agctcacacattttaaatatggagaagtgagatgtttggggttcga 145  Q
    |||||||||||||||||| | |||||||||| ||||||| ||||||    
T  27094297 agctcacacattttaaatgtagagaagtgaggtgtttggagttcga 27094342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 36795253 - 36795225
Alignment:
Q  99 gagctcacacattttaaatatggagaagt 127  Q
    |||||||||||||||||||||||||||||    
T  36795253 gagctcacacattttaaatatggagaagt 36795225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 52327060 - 52327100
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttg 137  Q
    ||||| || ||||||||||||||||||||||||| ||||||    
T  52327060 tagagttcgcacattttaaatatggagaagtgaggtgtttg 52327100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 6873 - 6822
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcgaacc 148  Q
    ||||||||||||| || || | |||||||||| |||||||||||||||||||    
T  6873 tagagctcacacagttaaattgtggagaagtgggatgtttggggttcgaacc 6822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 315754 - 315704
Alignment:
Q  97 tagagctcacacattttaaatatggagaagtgagatgtttggggttcgaac 147  Q
    ||||| ||||||||||||||| |||||||||| |||||  |||||||||||    
T  315754 tagagttcacacattttaaatgtggagaagtgggatgtccggggttcgaac 315704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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