View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15698_low_18 (Length: 356)
Name: NF15698_low_18
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 43910943 - 43910590
Alignment:
| Q |
1 |
aattcccaggttctttcttctcttcaatcctttgtgttaattagcacaaatcattttgtttatattgtttaatt----------tgattctcaggtggtg |
90 |
Q |
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| T |
43910943 |
aattcccaggttctttcttctcttcaatcctttgtgttaattagcacaaatcattttgtttatattgattgattaatgctactttgattctcaggtggtg |
43910844 |
T |
|
| Q |
91 |
ttgctttgaaaagaaaagaaaatggaacagcatcaggaacaagagtttactgttcagtgcagtcaacatcaggaccaccaccagcatggccaggacgagc |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43910843 |
ttgctttgaaaagaaaagaaaatggaacagcatcaggaacaagagtttactgttcagtgcagtcaacatcaggaccaccaccagcatggccaggacgagc |
43910744 |
T |
|
| Q |
191 |
aatcccagaattaggtaacaagacttgggaaggccctaaacccatttccattgtggggtgtactggttcaattggaactcaggtactgctatatgaaccc |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43910743 |
aatcccagaattaggtaacaagacttgggaaggccctaaacccatttccattgtggggtgtactggttcaattggaactcaggtactgctatatgaaccc |
43910644 |
T |
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| Q |
291 |
acactctcatcaaaattgactatttctgttttttaatgcttcatttgttacaag |
344 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43910643 |
accctctcatcaaaattgactatttctgttttttaatgcttcatttgttacaag |
43910590 |
T |
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