View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15698_low_20 (Length: 329)
Name: NF15698_low_20
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 42648615 - 42648300
Alignment:
| Q |
1 |
aaagagaagcctgatccttttaaactcttatcaacaagaatactaatactagcataaataagttctatctaacaaacgagaaactaacatcatggccttt |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42648615 |
aaagagaagcatgatccttttaaactcttatcaacaagaatactaatactagcataaataagttctatctaacaaacgagaaactaacatcatggccttt |
42648516 |
T |
|
| Q |
101 |
aagcgttagggc-tcaccacaagagtttgcttcatagtgaatgtgtttaaattaaatagttcaatttaaaagatgaatatgagtgaggacgtcataaatt |
199 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42648515 |
aagcgctagggcctcaccacaagagtttgcttcatagtgaatgtgtttaaattaaatagttcaatttgaaagatgaatatgagtgaggacgtcataaatt |
42648416 |
T |
|
| Q |
200 |
agaggttgaagatcaattgtgaatcatattaacgacatgttaaatcaacttctatgatgacataagtcaattttatttctctatccatttgaatataaat |
299 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42648415 |
agaggttgaagatcaattgtgaatcatattaatgacatgttaaatcaacttctatgatgaaataagtcaattttatttctctatccatttgaatataaat |
42648316 |
T |
|
| Q |
300 |
atagtcattcataact |
315 |
Q |
| |
|
|||||||||||||||| |
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| T |
42648315 |
atagtcattcataact |
42648300 |
T |
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