View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15698_low_21 (Length: 321)
Name: NF15698_low_21
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 35927696 - 35927402
Alignment:
| Q |
11 |
aatgcttggattgatgatgccacaagtttgaaggggttatttgattacttttggactcatgctttgaactcagatcaaactcatgagttgattgagaagt |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35927696 |
aatgcttggattgatgatgccacaagtttgaaggggttatttgattacttttggactcatgctttgaattcagatcaaactcatgagttgattgagaagt |
35927597 |
T |
|
| Q |
111 |
actgtgacttcactgttgacttcactagtggaaatacttcagcaatatgcaacaatgtaacagatagggcttacactgagaaaggaaagatagacttcta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35927596 |
actgtgacttcactgttgacttcactagtggaaatacttcagcaatatgcaacaatgtaacagatagggcttacactgagaaaggaaagatagatttcta |
35927497 |
T |
|
| Q |
211 |
taacatctacgctccattgtgtcacgactcttctttgaaaaatggttcaactggttatgtaagtaatgattttgacccttgttctgattactatg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35927496 |
taacatctacgctccattgtgtcacgactcttctttgaaaaatggttcaactggttatgtaagtaatgattttgacccttgttctgattactatg |
35927402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 35934510 - 35934228
Alignment:
| Q |
11 |
aatgcttggattgatgatgccacaagtttgaaggggttatttgattacttttggactcatgctttgaactcagatcaaactcatgagttgattgagaagt |
110 |
Q |
| |
|
|||||||||||||||||||| ||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35934510 |
aatgcttggattgatgatgctacaggtgacaaggggttatttgattacttctggactcatgctttgaactcagatcaaactcatgagttgattgagaagt |
35934411 |
T |
|
| Q |
111 |
actgtgacttcactgttgacttcactagtggaaatacttcagcaatatgcaacaatgtaacagatagggcttacactgagaaaggaaagatagacttcta |
210 |
Q |
| |
|
|||||||||||||| | |||| |||| |||| || | ||||||||||||| |||| | || |||||||||||||||||||||||| |
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| T |
35934410 |
actgtgacttcactaaaca------------aaattattcaacaatttgtatcaatgtaacagattgggccttcattgagaaaggaaagatagacttcta |
35934323 |
T |
|
| Q |
211 |
taacatctacgctccattgtgtcacgactcttctttgaaaaatggttcaactggttatgtaagtaatgattttgacccttgttctgattactatg |
305 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
35934322 |
taacatctatgcgccattgtgtcatgactcttctctgaaaaatggttcaactggttatgtaactaatgattttgacccttgttctgataactatg |
35934228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 35910296 - 35910011
Alignment:
| Q |
11 |
aatgcttggattgatgatgccacaagtttgaaggggttatttgattacttttggactcatgctttgaactcagatcaaactcatgagttgattgagaagt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35910296 |
aatgcttggattgatgatgccacaagtttaaaggggttttttgattacctttggactcatgctttgaactcagatcaaactcatgagttgattgagaagt |
35910197 |
T |
|
| Q |
111 |
actgtgacttcactgttgacttcactagtggaaatacttcagcaatatg---caacaatgtaacagatagggcttacactgagaaaggaaagatagactt |
207 |
Q |
| |
|
||||||||||||| || || |||| ||||||||| || ||| ||||||||| | ||| | | ||| | |||||||||||||| |
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| T |
35910196 |
actgtgacttcac------------tactgaaaatgtttcagcaatttgtatcaataatgtaacactaaaggccttctttgaacatggaaagatagactt |
35910109 |
T |
|
| Q |
208 |
ctataacatctacgctccattgtgtcacgactcttctttgaaaaatggttcaactggttatgtaagtaatgattttgacccttgttctgattactatg |
305 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
35910108 |
atataacatctatgctccattgtgtcatgactcctctctgaaaaatggttcaactggttatgtaagtaatgattttgacccttgttctgattattatg |
35910011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 35940076 - 35939794
Alignment:
| Q |
11 |
aatgcttggattgatgatgccacaagtttgaaggggttatttgattacttttggactcatgctttgaactcagatcaaactcatgagttgattgagaagt |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| |||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
35940076 |
aatgcttggattgatgatgctacaagtttaaaggggttatatgataacttgtggactcatgctttgaactcggatcaaactcatgagttgattgagaagt |
35939977 |
T |
|
| Q |
111 |
actgtgacttcactgttgacttcactagtggaaatacttcagcaatatgcaacaatgtaacagatagggcttacactgagaaaggaaagatagacttcta |
210 |
Q |
| |
|
||||| |||||||||| |||| ||||||||| || | ||||| || ||| | | | |||||||||||||||||||| || |
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| T |
35939976 |
actgt------------gacttcactaaacaaaattattcagcaatttgtaccaatgcaatgaatatgtccatgattgagaaaggaaagatagactcctt |
35939889 |
T |
|
| Q |
211 |
taacatctacgctccattgtgtcacgactcttctttgaaaaatggttcaactggttatgtaagtaatgattttgacccttgttctgattactatg |
305 |
Q |
| |
|
||||||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35939888 |
taacatctatgctccattatgtcacgactctactctgaaaaatggttcaactggttatgtaagtaatgatcttgacccttgttctgattactatg |
35939794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 35914731 - 35914449
Alignment:
| Q |
11 |
aatgcttggattgatgatgccacaagtttgaaggggttatttgattacttttggactcatgctttgaactcagatcaaactcatgagttgattgagaagt |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||| | |||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
35914731 |
aatgcttggattgatgatgccacaggtttaagggggttatttgattacctttggactcatgcgttgaactcggatcaaactcatgagttgattgagaagt |
35914632 |
T |
|
| Q |
111 |
actgtgacttcactgttgacttcactagtggaaatacttcagcaatatgcaacaatgtaacagatagggcttacactgagaaaggaaagatagacttcta |
210 |
Q |
| |
|
| |||||||||||| ||| ||| |||| |||| || | ||||| |||| ||| ||| | | |||| ||||||||||||||| ||| |
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| T |
35914631 |
attgtgacttcacttctga------------aaacgtttcatcaatttgtatcaatgcaacacataaggccttccttgagcaaggaaagatagactccta |
35914544 |
T |
|
| Q |
211 |
taacatctacgctccattgtgtcacgactcttctttgaaaaatggttcaactggttatgtaagtaatgattttgacccttgttctgattactatg |
305 |
Q |
| |
|
||||||||| |||||| | ||||| ||||||||| | |||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| |
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|
| T |
35914543 |
taacatctatgctccactatgtcatgactcttctctcaaaaatggctcaactggttatgtaactaatgactttgacccttgttctgattactatg |
35914449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 35921103 - 35920817
Alignment:
| Q |
11 |
aatgcttggattgatgatgccacaagtttgaaggggttatttgattacttttggactcatgctttgaactcagatcaaactcatgagttgattgagaagt |
110 |
Q |
| |
|
|||||||||||||||||||| || | ||| |||||| ||| |||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
35921103 |
aatgcttggattgatgatgcgacgaatttaaaggggatatatgataacttgtggactcatgctttaaactcagatcaaactcatgagttgattgagaagt |
35921004 |
T |
|
| Q |
111 |
actgtgacttcactgttgacttcactagtggaaatacttcagcaatatgcaacaatgtaacagatagggcttacactgagaaaggaaagatagacttcta |
210 |
Q |
| |
|
|||||||||| ||||| | |||| ||||||||| || ||||||| ||| |||| ||| | | ||||| ||||||||||||| |||| |
|
|
| T |
35921003 |
actgtgactt------------cactaaagaaaatgtttcagcaatttgtaacaatgcaactgataaggccttcgttgagacaggaaagatagacatcta |
35920916 |
T |
|
| Q |
211 |
taacatctacgctccattgtgtcacgactcttctttgaaaaatggttc---aactggttatgtaagtaatgattttgacccttgttctgattactatgt |
306 |
Q |
| |
|
||||||| | || ||||||||||| ||||||||| ||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
35920915 |
taacatccatgcgccattgtgtcatgactcttctctgaaaaatggttctagtactggttacgtaagcaatgattttgacccttgttctgattactatgt |
35920817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 21285187 - 21285260
Alignment:
| Q |
194 |
ggaaagatagacttctataacatctacgctccattgtgtcacgactcttctttgaaaaatggttcaactggtta |
267 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| ||||| ||| |||||||||||||||||||||| |
|
|
| T |
21285187 |
ggaaagatagacttatataacatctatgctccattgtgtcatgactcctctctgaaaaatggttcaactggtta |
21285260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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