View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15698_low_22 (Length: 307)
Name: NF15698_low_22
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_low_22 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 15937656 - 15937542
Alignment:
| Q |
193 |
tattcatttgcggaagcttcctcattaaacgttaaaagaaaaagttagaagtacagtccccatttcacacacagagaggatccaaagaaagtgcccaaga |
292 |
Q |
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| T |
15937656 |
tattcatttgcggaagcttcctcattaaacgttaaaagaaaaagttagaagtacagtccccatttcacacacagagaggatccaaagaaagtgcccaaga |
15937557 |
T |
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| Q |
293 |
aaccaaaattcatac |
307 |
Q |
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| T |
15937556 |
aaccaaaattcatac |
15937542 |
T |
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Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 15937842 - 15937729
Alignment:
| Q |
12 |
aaagggacaatatgaaaatttcaatgcgtctttgagcaatccaaggacctacaatttattttatcatgaaccaaatatatttgcttgcattttacaaacg |
111 |
Q |
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| T |
15937842 |
aaaggaacaatatgaaaatttcaatgcgtctttgagcaatccaaggacctacaatttattttatcatgaaccaaatatatttgcttgcattttacaaacg |
15937743 |
T |
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| Q |
112 |
atcccttgaaatac |
125 |
Q |
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| T |
15937742 |
atcccttgaaatac |
15937729 |
T |
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