View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15698_low_23 (Length: 301)
Name: NF15698_low_23
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 96 - 283
Target Start/End: Original strand, 16407352 - 16407541
Alignment:
| Q |
96 |
tgtgaatacatataaaaactaaaaccatcattttctttcaaacctacatttttcctctctactccaacaaattaaaatccatcaaaattcttcaaactca |
195 |
Q |
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| T |
16407352 |
tgtgaatacatatagaaactaaaaccatcattttctttcaaacctacatttttcctctctactccaacaaattaaaatccatcaaaattcttcaaactca |
16407451 |
T |
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| Q |
196 |
agcaacaagaaagtgtttaaaatctcaaagccacgttcctttgccttttatattttagggtttttga--attcagttaatataattgtaa |
283 |
Q |
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| T |
16407452 |
agcaacaagaaagtgtttaaaatctcaaagccacgttcctttgccttttatattatagggtttttgaatattcagttaatataattgtaa |
16407541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 7900160 - 7900232
Alignment:
| Q |
132 |
ttcaaacctacatttttcctctctactccaacaaattaaaatccatcaaaattcttcaaactcaagcaacaag |
204 |
Q |
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| T |
7900160 |
ttcaaacatacattttccctccctactccaataaatcaaaccccatcaaaaatcttcaaactcaagcaacaag |
7900232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 38114505 - 38114438
Alignment:
| Q |
154 |
ctactccaacaaattaaaatccatcaaaattcttcaaactcaagcaacaagaaagtgtttaaaatctc |
221 |
Q |
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| T |
38114505 |
ctactccaacgaatcaaagtccatcaaaatttgtcaaactcaaacaacaattaagtgttcaaaatctc |
38114438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 263
Target Start/End: Complemental strand, 1256417 - 1256306
Alignment:
| Q |
155 |
tactccaacaaattaaaatccatcaaaattcttcaaactcaagcaacaagaaagtgtttaaaatctcaaagc---cacgttcctttgccttttatatttt |
251 |
Q |
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| T |
1256417 |
tactccaacaaatcaaactcaaacaaaattcttcaaactcaaacaagaagaaaatattcaaaatctccaagccaacactttccttcacattttatatttt |
1256318 |
T |
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| Q |
252 |
agggtttttgaa |
263 |
Q |
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| T |
1256317 |
agggtttgtgaa |
1256306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 5864750 - 5864684
Alignment:
| Q |
134 |
caaacctacatttttcctctctactccaacaaattaaaatccatcaaaattcttcaaactcaagcaa |
200 |
Q |
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| T |
5864750 |
caaacctacattctccctctctactccaacaattcatactcgatcaaatttcttcaaactcaagcaa |
5864684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 26677630 - 26677592
Alignment:
| Q |
158 |
tccaacaaattaaaatccatcaaaattcttcaaactcaa |
196 |
Q |
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| T |
26677630 |
tccaacaaatcaaactccatcaaaattcttcaaactcaa |
26677592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 5921467 - 5921397
Alignment:
| Q |
149 |
cctctctactccaacaaattaaaatccatcaaaattcttcaaactcaagcaacaagaaagtgtttaaaatc |
219 |
Q |
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||||||||||||||||| | | ||||||||| ||||||||| |||||||||||| |||| || |||||| |
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| T |
5921467 |
cctctctactccaacaatccatactccatcaaatttcttcaaagtcaagcaacaagtaagtattcaaaatc |
5921397 |
T |
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