View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15698_low_25 (Length: 297)

Name: NF15698_low_25
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15698_low_25
NF15698_low_25
[»] chr2 (1 HSPs)
chr2 (19-293)||(40709182-40709445)
[»] chr6 (2 HSPs)
chr6 (19-215)||(34249340-34249536)
chr6 (31-215)||(1094355-1094542)
[»] chr1 (2 HSPs)
chr1 (19-215)||(5716871-5717064)
chr1 (19-215)||(29360222-29360417)
[»] chr5 (3 HSPs)
chr5 (31-215)||(39777398-39777578)
chr5 (31-192)||(16098321-16098482)
chr5 (19-164)||(32743570-32743715)
[»] scaffold0009 (1 HSPs)
scaffold0009 (19-215)||(3137-3336)
[»] chr8 (8 HSPs)
chr8 (33-215)||(5861163-5861345)
chr8 (23-210)||(9229196-9229382)
chr8 (137-214)||(25129713-25129790)
chr8 (32-175)||(25358412-25358553)
chr8 (31-127)||(25391442-25391538)
chr8 (31-127)||(25678066-25678162)
chr8 (161-215)||(44300589-44300643)
chr8 (62-127)||(25617342-25617407)
[»] scaffold0466 (1 HSPs)
scaffold0466 (31-216)||(8205-8385)
[»] chr3 (2 HSPs)
chr3 (32-220)||(25079916-25080103)
chr3 (36-99)||(27049158-27049221)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 40709182 - 40709445
Alignment:
Q  19 catcgtgtttgtcctcgagtgcatgggttcagacacgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccggagatccatcggaaat 118  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||           |||    
T  40709182 catcgtgtttggcctcgagtgcatgggttcagacatgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccgga-----------aat 40709270  T
Q  119 ttactttcagggcaatgattttggccacggcacaacaaaactctcttctttctttcctaactatccaaattctaatttactcttaatatttccaacagat 218  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  40709271 ttactttcagggcagtgattttggccacggcataacaaaactctcttctttctttcctaaccatccaaattttaatttactcttaatatttccaacagat 40709370  T
Q  219 tgtgttgattgtgcagttacaacctctatagattattttactacatgtttcggtgctgtggttatagtctgtgct 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  40709371 tgtgttgattgtgcagttacaacctctatagattattttactacatgtttcggtgttgtggttatagcctgtgct 40709445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 34249340 - 34249536
Alignment:
Q  19 catcgtgtttgtcctcgagtgcatgggttcagacacgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccggagatccatcggaaat 118  Q
    |||||||||||  |||||||||| | ||||||||| ||||| |||||||  |||||||||||||| ||||| || ||||||| |||| |||| || ||||    
T  34249340 catcgtgtttgatctcgagtgcacgagttcagacatgcagttatgtaaatcttggggagcaaaactggataatgagttgcactggaggtccaccgaaaat 34249439  T
Q  119 ttactttcagggcaatgattttggccacggcacaacaaaactctcttctttctttcctaactatccaaattctaatttactcttaatatttccaaca 215  Q
    || ||||||| |||||| ||||| ||||||||||||||||||||  ||| || ||||||||| ||  ||||||| ||| ||||||||||||||||||    
T  34249440 tttctttcagagcaatggttttgaccacggcacaacaaaactcttctctatcattcctaactctctcaattctagttttctcttaatatttccaaca 34249536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 31 - 215
Target Start/End: Complemental strand, 1094542 - 1094355
Alignment:
Q  31 cctcgagtgcatgggttcagacacgcagtaatgtaaactttggggagcaaaaccggatattgggttgca-ccggagatccatcggaaatttactttcagg 129  Q
    ||||||||||| | ||||| |||||||||  ||||||| || |||||||||||||||| |||||||||| ||||||||||| || |||||| ||||||||    
T  1094542 cctcgagtgcacgagttcacacacgcagttgtgtaaaccttagggagcaaaaccggat-ttgggttgcacccggagatccaccgaaaatttgctttcagg 1094444  T
Q  130 gcaatgattttggccacggcacaacaaaactctcttctttctttcctaactatccaa-----attctaatttactcttaatatttccaaca 215  Q
     || ||| ||| | |||||||||||  ||||||||||| ||||||||| |||| |||     ||| || ||||||||||||||||||||||    
T  1094443 acagtgacttttgtcacggcacaac--aactctcttctatctttcctatctattcaaaatctattatattttactcttaatatttccaaca 1094355  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 5716871 - 5717064
Alignment:
Q  19 catcgtgtttgtcctcgagtgcatgggttcagacacgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccggagatccatcggaaat 118  Q
    |||||| |||| | ||||||| ||| ||| |||||||||||  |||||| |||||||||||||| ||||  |||||||||||||||  | || |||||||    
T  5716871 catcgtttttgacttcgagtggatgagtttagacacgcagttgtgtaaattttggggagcaaaatcggac-ttgggttgcaccggaagtacaccggaaat 5716969  T
Q  119 ttactttcagggcaatgattttggccacggcacaacaaaactctcttctttctttcctaactatccaaattctaatttactcttaatatttccaaca 215  Q
    || | ||||||||| || ||||  ||||||||||||||  ||||||||| |||||||||||| || |||||||| ||||||||||||||||||||||    
T  5716970 ttgcattcagggcagtggtttttaccacggcacaacaa--ctctcttctatctttcctaactctctaaattctagtttactcttaatatttccaaca 5717064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 29360222 - 29360417
Alignment:
Q  19 catcgtgtttgtcctcgagtgcatgggttcagacacgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccggagatccatcggaaat 118  Q
    ||||||||||| |||| |||||| |  ||||||||||||||  ||||||| ||| ||||||||| |||||||||||||||||||||| |||| || ||||    
T  29360222 catcgtgtttggcctcaagtgcacgaattcagacacgcagttgtgtaaaccttgaggagcaaaatcggatattgggttgcaccggaggtccaccgaaaat 29360321  T
Q  119 ttactttcagggcaatgattttggccacggcacaacaaaactctcttctttc-tttcctaactatc-caaattctaatttactcttaatatttccaaca 215  Q
    || |||||| |||| ||| ||| | |  ||||||||  || |||||| | || |||||||||| || ||||||||| || |||||||||| ||||||||    
T  29360322 ttgctttcaaggcagtgacttttgtc-gggcacaac--aattctcttatatcttttcctaactctctcaaattctagttcactcttaataattccaaca 29360417  T

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Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 31 - 215
Target Start/End: Original strand, 39777398 - 39777578
Alignment:
Q  31 cctcgagtgcatgggttcagacacgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccggagatccatcggaaatttactttcaggg 130  Q
    |||||||||||| |||||| |||||||||  |||||||||||||||||||||||||||  ||||||| ||||||| |||| || |||||  || ||| ||    
T  39777398 cctcgagtgcataggttcaaacacgcagttgtgtaaactttggggagcaaaaccggat-ctgggttgtaccggaggtccaccgaaaattcgctctcaagg 39777496  T
Q  131 caatgattttggccacggcacaacaaaactctcttctttctttcctaactatccaaattctaatttactcttaatatttccaaca 215  Q
    ||||| |||| | || ||||||||  || |||||||| ||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  39777497 caatggtttttgtcatggcacaac--aattctcttctatctttcctagctatccaaaatctaattt-ctcttaatatttccaaca 39777578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 16098482 - 16098321
Alignment:
Q  31 cctcgagtgcatgggttcagacacgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccggagatccatcggaaatttactttcaggg 130  Q
    ||||||||| | | ||||| ||||| |||  |||||||||||  |||||||||||| |||||  |||||| ||||||||| ||||| ||| |||||||||    
T  16098482 cctcgagtgaacgagttcacacacgtagttgtgtaaactttgaagagcaaaaccggttattgaattgcactggagatccaccggaattttgctttcaggg 16098383  T
Q  131 caatgattttggccacggcacaacaaaactctcttctttctttcctaactatccaaattcta 192  Q
     | || ||||||||||||||||| ||| |||||| ||   |||||| |||||||||| ||||    
T  16098382 tagtggttttggccacggcacaataaatctctctcctaattttccttactatccaaaatcta 16098321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 32743715 - 32743570
Alignment:
Q  19 catcgtgtttgtcctcgagtgcatgggttcagacacgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccggagatccatcggaaat 118  Q
    ||||||||||| |||| |||||||| ||||||||| |||||  ||||||| |||||||||||| | ||| ||| | ||||| ||||| |||| |||||||    
T  32743715 catcgtgtttggcctcaagtgcatgagttcagacaagcagttgtgtaaaccttggggagcaaatcaggaaattagattgcatcggaggtccaccggaaat 32743616  T
Q  119 ttactttcagggcaatgattttggccacggcacaacaaaactctct 164  Q
    || ||||||||| | |  ||||||||||| |||||  |||||||||    
T  32743615 ttgctttcagggtagtagttttggccacgacacaattaaactctct 32743570  T

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Target: scaffold0009 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 3336 - 3137
Alignment:
Q  19 catcgtgtttgtcctcgagtgcatgggttcagacacgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccggagatccatcggaaat 118  Q
    ||||||||||| ||||||||||| ||||||||||||| | |  | ||||| ||| |||| |||| |||||||||  ||||||||||| | || |  ||||    
T  3336 catcgtgtttgacctcgagtgcacgggttcagacacgaaattgtataaaccttgaggagtaaaatcggatattgaattgcaccggagtttcaccaaaaat 3237  T
Q  119 ttactttcagggcaatgattttggccacggcacaacaaaactctcttct-ttctttcctaac---tatccaaattctaatttactcttaatatttccaac 214  Q
    || ||||||||| || | ||||||||||||||||||||||||||||||| ||||||| ||||   |||||||||||| |||| ||||||||||||| |||    
T  3236 ttgctttcagggtaaaggttttggccacggcacaacaaaactctcttctattctttcataaccaatatccaaattct-atttcctcttaatatttcaaac 3138  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 5861163 - 5861345
Alignment:
Q  33 tcgagtgcatgggttcagacacgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccggagatccatcggaaatttactttcagggca 132  Q
    |||||||||| ||||||||||| ||||  |||||| |||| | ||||||| ||||||||  |||||| |  || |||| || |||||| ||||||| |||    
T  5861163 tcgagtgcattggttcagacacacagttgtgtaaattttgagaagcaaaatcggatattaagttgcatcaaaggtccaccgaaaatttgctttcagagca 5861262  T
Q  133 atgattttggccacggcacaacaaaactctcttctttctttcctaactatccaaattctaatttactcttaatatttccaaca 215  Q
     |  ||||| |||||||||||||||||||| |||| || || ||||||||||||||||||||||||| ||||| |||||||||    
T  5861263 gtagttttgaccacggcacaacaaaactcttttctatcatttctaactatccaaattctaatttacttttaatgtttccaaca 5861345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 9229382 - 9229196
Alignment:
Q  23 gtgtttgtcctcgagtgcatgggttcagacacgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccggagatccatcggaaatttac 122  Q
    ||||||| |||  |||||| | ||||||||| ||| |  ||||||| |||| ||||||||||||||||||||||||| | ||| || |||| |||||| |    
T  9229382 gtgtttgcccttaagtgcacgagttcagacatgcaattgtgtaaaccttggagagcaaaaccggatattgggttgcatctgaggtctatcgaaaattttc 9229283  T
Q  123 tttcagggcaatgattttggccacggcacaacaaaactctcttctttc-tttcctaactatccaaattctaatttactcttaatatttc 210  Q
    |||||| | | || ||||||||||||||||||  || |||||||| || |||||||||| ||  ||||||| || ||||||||||||||    
T  9229282 tttcagagtagtggttttggccacggcacaac--aattctcttctatcttttcctaactctctcaattctagttcactcttaatatttc 9229196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 25129713 - 25129790
Alignment:
Q  137 ttttggccacggcacaacaaaactctcttctttctttcctaactatccaaattctaatttactcttaatatttccaac 214  Q
    ||||| ||||||||||||| ||||||||||  |||||||||||||||  ||||||| |||||||||||||||||||||    
T  25129713 ttttgtccacggcacaacataactctcttcgatctttcctaactatctcaattctattttactcttaatatttccaac 25129790  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 25358412 - 25358553
Alignment:
Q  32 ctcgagtgcatgggttcagacacgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccggagatccatcggaaatttactttcagggc 131  Q
    |||||||||| | ||||||| ||  |||  ||||||| |||||||||||||||||||||||| ||||||||||| |||| || |||||| ||||||   |    
T  25358412 ctcgagtgcacgagttcagatacatagttgtgtaaaccttggggagcaaaaccggatattggattgcaccggaggtccaccgaaaatttgctttcatttc 25358511  T
Q  132 aatgattttggccacggcacaacaaaactctcttctttctttcc 175  Q
    | ||| |||  ||||||||||||  | ||||||||| |||||||    
T  25358512 agtgactttttccacggcacaac--atctctcttctatctttcc 25358553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 25391442 - 25391538
Alignment:
Q  31 cctcgagtgcatgggttcagacacgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccggagatccatcggaaatttactttca 127  Q
    ||||||||||| | ||||||| ||  |||  ||||||| |||||||||||||||||||||||| ||||||||||| |||| || |||||| ||||||    
T  25391442 cctcgagtgcacgagttcagatacatagttgtgtaaaccttggggagcaaaaccggatattggattgcaccggaggtccaccgaaaatttgctttca 25391538  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 25678066 - 25678162
Alignment:
Q  31 cctcgagtgcatgggttcagacacgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccggagatccatcggaaatttactttca 127  Q
    ||||||||||| | ||||||| ||| |||  ||||||| ||||  |||||||||||||||||| ||||||||||| |||| || |||||| ||||||    
T  25678066 cctcgagtgcacgagttcagatacgtagttgtgtaaaccttggaaagcaaaaccggatattggattgcaccggaggtccaccgaaaatttgctttca 25678162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 44300589 - 44300643
Alignment:
Q  161 ctcttctttctttcctaactatccaaattctaatttactcttaatatttccaaca 215  Q
    ||||||| |||||||||||||||  ||||||| ||||||||||||||||||||||    
T  44300589 ctcttctatctttcctaactatctcaattctattttactcttaatatttccaaca 44300643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 25617342 - 25617407
Alignment:
Q  62 tgtaaactttggggagcaaaaccggatattgggttgcaccggagatccatcggaaatttactttca 127  Q
    |||||||||| | |||||||| | |||||||| ||||||||||| |||| ||||||||| ||||||    
T  25617342 tgtaaactttagagagcaaaatcagatattggattgcaccggaggtccaccggaaatttgctttca 25617407  T

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Target: scaffold0466 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 8385 - 8205
Alignment:
Q  31 cctcgagtgcatgggttcagacacgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccggagatccatcggaaatttactttcaggg 130  Q
    |||| |||||| | ||||||||||| |||  ||||||| ||||||||||||||||||||||   ||||||| ||| ||||| |||||||| |||||| ||    
T  8385 cctcaagtgcacgagttcagacacgtagttgtgtaaacattggggagcaaaaccggatattaaattgcaccagaggtccattggaaatttgctttcatgg 8286  T
Q  131 caatgattttggccacggcacaacaaaactctcttctttctttcctaactatccaaattctaatttactcttaatatttccaacag 216  Q
    || |   ||| |||||||| ||||  ||||||||||| |||||| || |||||| || |   |||| || ||||||||||||||||    
T  8285 cagttgcttttgccacggcgcaac--aactctcttctatctttcgtatctatccgaact---atttcctattaatatttccaacag 8205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 32 - 220
Target Start/End: Complemental strand, 25080103 - 25079916
Alignment:
Q  32 ctcgagtgcatgggttcagacacgcagtaatgtaaactttggggagcaaaacc-ggatattgggttgcaccggagatccatcggaaatttactttcaggg 130  Q
    |||||||||| | |||||||||| || |  ||||||| ||  |||| |||||| || |||||||||||||||||| |||| ||||||||| ||||||| |    
T  25080103 ctcgagtgcacgagttcagacacacaattgtgtaaaccttacggagaaaaacccgggtattgggttgcaccggaggtccagcggaaatttgctttcagag 25080004  T
Q  131 caatgattttggccacggcacaacaaaactctcttctttctttcctaactatccaaattctaatttactcttaatatttccaacagattg 220  Q
    || ||  ||| ||||| ||||||||||  |||||| | |  ||||||||||||  ||||||| |||| |  |||||||||||||| ||||    
T  25080003 cagtggcttttgccactgcacaacaaa--tctcttttattattcctaactatctcaattctattttaattgtaatatttccaacacattg 25079916  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 27049158 - 27049221
Alignment:
Q  36 agtgcatgggttcagacacgcagtaatgtaaactttggggagcaaaaccggatattgggttgca 99  Q
    |||||||||||| | ||||| |||  |||||||||||| |||||||||| |||||| |||||||    
T  27049158 agtgcatgggttaaaacacgtagttgtgtaaactttggagagcaaaaccagatattaggttgca 27049221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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