View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15698_low_26 (Length: 292)
Name: NF15698_low_26
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_low_26 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 16579532 - 16579276
Alignment:
| Q |
19 |
ttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaactgccacaagccatttgaacttctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16579532 |
ttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaactgccacaagccatttgaacttctt |
16579433 |
T |
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| Q |
119 |
gttaaacaatttcccatgtgatagatggatcaacatcgataatatcttcaatgctgtcatattctttgttagagtcctcgccgtaactcccaggatccct |
218 |
Q |
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|||||||||||||||||||||| ||||||| | ||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||||| |
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| T |
16579432 |
gttaaacaatttcccatgtgatcgatggatgagcatcgataatatcatcaatgctgtcatattcttcgtcagagtcctcgccgtaactctcaggatccct |
16579333 |
T |
|
| Q |
219 |
gcacttgttgatcaagtcctcatactgcttattattattcttcaatttcggcatcat |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16579332 |
gcacttgttgatcaagtcctcatactgcttattattattcttcaatttcggaatcat |
16579276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 16615848 - 16616104
Alignment:
| Q |
19 |
ttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaactgccacaagccatttgaacttctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16615848 |
ttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaactgccacaagccatttgaacttctt |
16615947 |
T |
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| Q |
119 |
gttaaacaatttcccatgtgatagatggatcaacatcgataatatcttcaatgctgtcatattctttgttagagtcctcgccgtaactcccaggatccct |
218 |
Q |
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| T |
16615948 |
gttaaacaatttcccatgtgatcgatggatgagcatcgataatatcatcaatgctgtcatattcttcgtcagagtcctcgccgtaactctcaggatccct |
16616047 |
T |
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| Q |
219 |
gcacttgttgatcaagtcctcatactgcttattattattcttcaatttcggcatcat |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16616048 |
gcacttgttgatcaagtcctcatactgcttattattattcttcaatttcggaatcat |
16616104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 16872851 - 16872657
Alignment:
| Q |
19 |
ttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaactgccacaagccatttgaacttctt |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16872851 |
ttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcaattttcttccttcccctaactgccacaagccatttgaacttctt |
16872752 |
T |
|
| Q |
119 |
gttaaacaatttcccatgtgatagatggatcaacatcgataatatcttcaatgctgtcatattctttgttagagtcctcgccgtaactcccagga |
213 |
Q |
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| T |
16872751 |
gttaaacaatttcccatgtgatcgatggatcagcatcgataatatcttcaatgctgtcatattctttgttagagtcctcgccgtaactcccagga |
16872657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 24 - 275
Target Start/End: Complemental strand, 16570929 - 16570696
Alignment:
| Q |
24 |
agccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaactgccacaagccatttgaacttcttgttaa |
123 |
Q |
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||||||||||||| ||||||||| || |||||||||||||||||| ||||||| ||||||| |||| | |||||||| ||||||||||||||||| |
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| T |
16570929 |
agccaattttgataggtaggtaac---tgttcaacttgttcaaaccttccagttttattccttctcctagccgccacaagatctttgaacttcttgttaa |
16570833 |
T |
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| Q |
124 |
acaatttcccatgtgatagatggatcaacatcgataatatcttcaatgctgtcatattctttgttagagtcctcgccgtaactcccaggatccctgcact |
223 |
Q |
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| | | ||||||||||| ||||||||| |||||||||| | ||| ||| | ||||||||||| |||||||||||||||||| || |
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| T |
16570832 |
a-agtgtcccatgtgatggatggatcagcatcgataatcttatcatggctctaatattctttgtcagagtcctcgccgtaact--------------tct |
16570748 |
T |
|
| Q |
224 |
tgttgatcaagtcctcatactgcttattattattcttcaatttcggcatcat |
275 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16570747 |
tgttaatcaagtcctcatactgcttattattattcttcaatttgggcatcat |
16570696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 24 - 266
Target Start/End: Original strand, 17040306 - 17040549
Alignment:
| Q |
24 |
agccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaactgccacaagccatttgaacttcttgttaa |
123 |
Q |
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||||||||| | | |||||||||| ||| |||||||| |||| |||| ||| |||||||||||||||| | ||||||||| ||||||||||||||| | |
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| T |
17040306 |
agccaatttagctaggtaggtaagctgt--tcaacttgctcaagccttccagatttcttccttcccctagccgccacaagctgtttgaacttcttgtt-a |
17040402 |
T |
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| Q |
124 |
acaatttcccatgtgatagatggatcaacatcgataat---atcttcaatgctgtcatattctttgttagagtcctcgccgtaactcccagga---tccc |
217 |
Q |
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||| | | ||||||||| || |||||| |||||||||| ||| | | ||| |||||||||| || | ||||| ||||||||| ||||| | || |
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| T |
17040403 |
acagtgtgccatgtgatcgacggatcagcatcgataatcgaatcgt--aagctctcatattcttcgtcaaagtccctaccgtaactctcaggattctgcc |
17040500 |
T |
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| Q |
218 |
tgcacttgttgatcaagtcctcatactgcttattattattcttcaattt |
266 |
Q |
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|||||||||| ||||| |||||||||||| ||||||| ||||||||||| |
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| T |
17040501 |
tgcacttgttaatcaaatcctcatactgcatattattcttcttcaattt |
17040549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 24 - 267
Target Start/End: Complemental strand, 32790997 - 32790754
Alignment:
| Q |
24 |
agccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaactgccacaagccatttgaacttcttgttaa |
123 |
Q |
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|
||||||||||| | |||||||||| ||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||||||| |
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| T |
32790997 |
agccaattttgttaggtaggtaagctgt--tcaacttgttcaaaccttccagttttattccttcccctagctgccacaagctctttgaacttcttgtt-c |
32790901 |
T |
|
| Q |
124 |
acaatttcccatgtgatagatggatcaacatcgataatatcttcaatgctgtcatattctttgttagagtcctcgccgtaactcccagga---tccctgc |
220 |
Q |
| |
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||| | ||||||||||| ||||||||| |||| |||||||| ||| ||| |||||||||| || ||||| ||| ||||||||| ||||| ||||||| |
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| T |
32790900 |
acagtatcccatgtgatcgatggatcagcatcaataatatcgtcatggctctcatattcttcgtcagagtgctcaccgtaactctcaggattttccctgc |
32790801 |
T |
|
| Q |
221 |
acttgttgatcaagtcctcatactgcttattattattcttcaatttc |
267 |
Q |
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||||| | ||||| ||||||||||||||||||| |||||||||||| |
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| T |
32790800 |
acttggtaatcaaaccctcatactgcttattattcttcttcaatttc |
32790754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 12734 - 12772
Alignment:
| Q |
237 |
ctcatactgcttattattattcttcaatttcggcatcat |
275 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |
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| T |
12734 |
ctcatactgcttattattattcttcaatttctgcatcat |
12772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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