View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15698_low_7 (Length: 479)
Name: NF15698_low_7
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15698_low_7 |
 | |
|
| [»] chr3 (7 HSPs) |
| |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 9 - 479
Target Start/End: Original strand, 35927733 - 35928203
Alignment:
| Q |
9 |
aagttagatttatgagattgtgagttacatttcatacttggtcttttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35927733 |
aagttagatttatgagattgtgagttacatttcatacttggtcttttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttat |
35927832 |
T |
|
| Q |
109 |
agagtttattgttgtgaagaatagtcgatgcaagttgaggaacataatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtgg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35927833 |
agagtttattgttgtgaagaatagtcgatgcaagttgaggaacataatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtgg |
35927932 |
T |
|
| Q |
209 |
aaatctctccagccagttgattaggaagacgtaagaatccttggcagttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35927933 |
aaatctctccagccagttgattaggaagacgtaagaatccttggcagttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaat |
35928032 |
T |
|
| Q |
309 |
cccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatgataaactggtaagttattcatgtctaagaataaatgcatcata |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35928033 |
cccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatgataaactggtaagttattcatgtctaagaataaatgcatcata |
35928132 |
T |
|
| Q |
409 |
agaaacaatttcattctatcgatgattgtttcaccttcagtccaagcatatgggttacggtatagtgtttt |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35928133 |
agaaacaatttcattctatcgatgattgtttcaccttcagtccaagcatattggttacggtatagtgtttt |
35928203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 35910325 - 35910811
Alignment:
| Q |
1 |
taatactgaagttagatttatgagattgtgagttacatttcatacttggtcttttgaagtttgaagaacatacagaaatgcctttgaggttaataacagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| || || |
|
|
| T |
35910325 |
taatactgaagttagatttatgagattgtgagttacatttcatacttggtcttttgaagttggaaaatcatacagaaatgcctttgaggttaacaatggt |
35910424 |
T |
|
| Q |
101 |
gttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacataatgaccagcataactctctccagctatgtaaaaagctcttgttttg |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| |
|
|
| T |
35910425 |
gttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacataatgaccagcataactctctccagttatgtaaaaatctctggttttg |
35910524 |
T |
|
| Q |
201 |
tactgtggaaatctctccagccagttgattaggaagacgtaagaatccttggcagttgatttatctcctgacttgtcatagtcagaagttgtgtttgaat |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||| || | || ||||||||||| ||||||||||| |||||||||||||| ||||||||||| | |
|
|
| T |
35910525 |
tattgtggaaatctctccagccagttgacgaggaagacataggtgtctttggcagttgacttatctcctgatttgtcatagtcagatgttgtgtttgagt |
35910624 |
T |
|
| Q |
301 |
aggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatg--ataaactggtaagttattcatgtctaagaataa |
398 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| ||||| || || |||||||||||||||||| |||| ||||||| ||||||||||| || || |
|
|
| T |
35910625 |
aggaaaatcctactcctgctggagattctaagaagagtacgttcgccactgcatatttcataatgatataagttggtaagatattcatgtctcag---aa |
35910721 |
T |
|
| Q |
399 |
atgcatcataagaaacaatttcattctat---------cgatgattgtttcaccttcagtccaagcatatgggttacggtatagtgtttt |
479 |
Q |
| |
|
||||||||||||||||||| | ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35910722 |
atgcatcataagaaacaatgtaattatattgatgatgatgatgattgtttcaccttcattccaagcatatgggttacggtatagtgtttt |
35910811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 479
Target Start/End: Original strand, 35940107 - 35940588
Alignment:
| Q |
7 |
tgaagttagatttatgagattgtgagttacatttcatacttggtcttttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgtt |
106 |
Q |
| |
|
||||||||||| ||||||||||||| ||| ||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
35940107 |
tgaagttagatatatgagattgtgatttatattgcattattagtcttttgaagtttgatcaacatacagaaatgcctttgaggttaataatggtgttctt |
35940206 |
T |
|
| Q |
107 |
atagagtttattgttgtgaagaatagtcgatgcaagttgaggaacataatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgt |
206 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
35940207 |
atagagtttattgttgtgtagaatagtggatgcaagttgaggaacataatgaccagcataactctctccacttatgtaaaaatctcttgttttgtactgt |
35940306 |
T |
|
| Q |
207 |
ggaaatctctccagccagttgattaggaagacgtaagaatccttggcagttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaa |
306 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
35940307 |
ggaaatctctccagccagttgataaggaagacataggaatccttggcagttgatttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaa |
35940406 |
T |
|
| Q |
307 |
atcccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatg--ataaactggtaagttattcatgtctaagaataaatgcat |
404 |
Q |
| |
|
|||| | |||||||||||| || ||||| ||||| || || |||||||||||||||||| |||| | ||||| ||||||||||| || |||||||| |
|
|
| T |
35940407 |
atcctattcctgctggagattccaagaagagtacgttcgccactgcatatttcataatgatataagtttgtaagatattcatgtctcag---aaatgcat |
35940503 |
T |
|
| Q |
405 |
cat-aagaaacaatttcattctat---------cgatgattgtttcaccttcagtccaagcatatgggttacggtatagtgtttt |
479 |
Q |
| |
|
||| |||||||||| | ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35940504 |
cataaagaaacaatgtaattatattgatgatgatgatgattgtttcaccttcattccaagcatatgggttacggtatagtgtttt |
35940588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 479
Target Start/End: Original strand, 35914768 - 35915238
Alignment:
| Q |
9 |
aagttagatttatgagattgtgagttacatttcatacttggtcttttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttat |
108 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||| ||| || |||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35914768 |
aagttagatttatgaggttgacagttatattgcattattagtctttcaaagtttgaacaacatacagaaatgcctttgaggttaatagtggtgttgttat |
35914867 |
T |
|
| Q |
109 |
agagtttattgttgtgaagaatagtcgatgcaagttgaggaacataatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtgg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35914868 |
agagtttattgttgtgaagaatagtcgatgcaagctgcggaacatagtgaccagcataactctctccagttatgtaaaaagctcttgttttgtactgtgg |
35914967 |
T |
|
| Q |
209 |
aaatctctccagccagttgattaggaagacgtaagaatccttggcagttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaat |
308 |
Q |
| |
|
||||||||||||||||||||| ||||| || || | ||| || || || || ||||||||||| |||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
35914968 |
aaatctctccagccagttgatgaggaaaacataggcatctttagcggtggacttatctcctgaattgtcatagtcagatgttgtgtttgagtaggaaaat |
35915067 |
T |
|
| Q |
309 |
cccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatg--ataaactggtaagttattcatgtctaagaataaatgcatca |
406 |
Q |
| |
|
|| |||||||| ||||| || ||||| |||||||||||||||||||||||||||| | |||| ||||||| || |||||||| || |||||||| |
|
|
| T |
35915068 |
cctactcctgccggagattccaagaagagtacatttgcaactgcatatttcataaggatataagttggtaagataatcatgtctcag---gcatgcatca |
35915164 |
T |
|
| Q |
407 |
t-aagaaacaatttcattctatcgatgattgtttcaccttcagtccaagcatatgggttacggtatagtgtttt |
479 |
Q |
| |
|
| |||||| || || || ||| ||||||||| ||||||||| |||||||||||||||| ||||||| |||||| |
|
|
| T |
35915165 |
taaagaaataaattagttatattgatgattgtctcaccttcattccaagcatatgggttgcggtataatgtttt |
35915238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 479
Target Start/End: Original strand, 35921143 - 35921609
Alignment:
| Q |
12 |
ttagatttatgagattgtgagttacatttcatacttggtcttttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttataga |
111 |
Q |
| |
|
||||| ||||||||||| |||||| ||||||| || ||| || |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35921143 |
ttagaattatgagattgcgagttatatttcattattagtcattcgaagtttgaacaacatacagaaatgcctttgaggttaataatggtgttgttataga |
35921242 |
T |
|
| Q |
112 |
gtttattgttgtgaagaatagtcgatgcaagttgaggaacataatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaa |
211 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||| ||||||||||||||||| |
|
|
| T |
35921243 |
gtttattgttgtaaagaatagtggatgcaagttgaggaacataatgaccggcataactctctccagttatgtaaaaatctctggttttgtactgtggaaa |
35921342 |
T |
|
| Q |
212 |
tctctccagccagttgattaggaagacgtaagaatccttggcagttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatccc |
311 |
Q |
| |
|
||||||||||||||||||||||||||| || | ||| || ||||| || ||||||||||| ||||||||||| || | ||||||||| ||||||||||| |
|
|
| T |
35921343 |
tctctccagccagttgattaggaagacataggcatctttagcagtggacttatctcctgaattgtcatagtccgatgatgtgtttgagtaggaaaatcct |
35921442 |
T |
|
| Q |
312 |
actcctgctggagactctaagaatagtacatttgcaactgcatatttcataatga--taaactggtaagttattcatgtctaagaataaatgcatcataa |
409 |
Q |
| |
|
|| ||||||||||| || ||||| ||||||||||| |||||||||||||||| || ||| | |||| || |||||||| || ||||||||||||| |
|
|
| T |
35921443 |
acccctgctggagattccaagaagagtacatttgccactgcatatttcataaggagttaagtttctaagataatcatgtctcag---aaatgcatcataa |
35921539 |
T |
|
| Q |
410 |
gaaacaatttcattctatcgatgattgtttcaccttcagtccaagcatatgggttacggtatagtgtttt |
479 |
Q |
| |
|
|||| || || |||||||||| | ||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
35921540 |
ataacacattagttatatcgatgatcatctcaccttcattccaagcatatgggttacggtataatgtttt |
35921609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 7 - 390
Target Start/End: Original strand, 35934544 - 35934929
Alignment:
| Q |
7 |
tgaagttagatttatgagattgtgagttacatttcatacttggtcttttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgtt |
106 |
Q |
| |
|
||||||||| | |||| ||| |||||||| ||| ||| || ||||||||||| |||| |||||||||| ||||||||||||||||| | || ||||| |
|
|
| T |
35934544 |
tgaagttagttatatgtgatagtgagttatattgcattattagtcttttgaagattgatcaacatacagatatgcctttgaggttaatgatggttttgtt |
35934643 |
T |
|
| Q |
107 |
atagagtttattgttgtgaagaatagtcgatgcaagttgaggaacataatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgt |
206 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||| |
|
|
| T |
35934644 |
atagagtttatggtggtgaagaatagtggatgcaagttgaggaacataatgaccagcataactctctccagttatgtaaaaatctctggttttgtactgt |
35934743 |
T |
|
| Q |
207 |
ggaaatctctccagccagttgattaggaagacgtaagaatccttggcagttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| || || | ||| || ||||| || |||||||||| || | ||||||||||||||||||||| ||||||| |
|
|
| T |
35934744 |
ggaaatctctccagccagttgattaggaaaacataggcatctttagcagtggacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaa |
35934843 |
T |
|
| Q |
307 |
atcccactcctgctggagactctaagaatagtacatttgcaactgc--atatttcataatgataaactggtaagttattcatgtct |
390 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||| |||||| ||||||||||| |||| || | ||||||||| |
|
|
| T |
35934844 |
atcccactcctgctggagactctaagaagagtatatttgcaactgcatatattttataatgataaattggttagatgttcatgtct |
35934929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 11084471 - 11084527
Alignment:
| Q |
137 |
tgcaagttgaggaacataatgaccagcataactctctccagctatgtaaaaagctct |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||| |
|
|
| T |
11084471 |
tgcaagttgaggaacataatgaccagcataactttctccagcaatgtagaaatctct |
11084527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 6208979 - 6209039
Alignment:
| Q |
292 |
tgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgc |
352 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| || | |||||||| ||||| |
|
|
| T |
6208979 |
tgtttgaataggaaaatccaactcctgctggagactctaaaaagataacatttgccactgc |
6209039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 6208831 - 6208910
Alignment:
| Q |
144 |
tgaggaacataatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagcca |
223 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||| | ||| ||| || || ||||||||||||||||| ||||| |
|
|
| T |
6208831 |
tgaggaacataatggccagcataactttcaccagctatgaagaaatctcgagtcttatactgtggaaatctctcaagcca |
6208910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 6215695 - 6215780
Alignment:
| Q |
141 |
agttgaggaacataatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagtt |
226 |
Q |
| |
|
|||||||| |||||||| ||||||||||| || |||| |||| | ||| ||| | || ||||||||||||||||| |||||||| |
|
|
| T |
6215695 |
agttgagggacataatggccagcataactttcaccagttatgaagaaatctcgaatcttatactgtggaaatctctcaagccagtt |
6215780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 6178241 - 6178277
Alignment:
| Q |
294 |
tttgaataggaaaatcccactcctgctggagactcta |
330 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
6178241 |
tttgaataagaaaatccaactcctgctggagactcta |
6178277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 316145 - 316183
Alignment:
| Q |
139 |
caagttgaggaacataatgaccagcataactctctccag |
177 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
316145 |
caagttgaggaacataatgtccagcataactttctccag |
316183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University