View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15698_low_9 (Length: 450)

Name: NF15698_low_9
Description: NF15698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15698_low_9
NF15698_low_9
[»] chr8 (7 HSPs)
chr8 (3-432)||(36828703-36829147)
chr8 (4-61)||(12611716-12611773)
chr8 (5-34)||(30812849-30812878)
chr8 (4-49)||(37808215-37808260)
chr8 (4-61)||(39702173-39702230)
chr8 (5-61)||(7531650-7531706)
chr8 (17-61)||(16921451-16921495)
[»] chr7 (6 HSPs)
chr7 (135-181)||(2799162-2799208)
chr7 (5-61)||(31840450-31840506)
chr7 (15-61)||(24777191-24777237)
chr7 (5-61)||(34745967-34746023)
chr7 (5-61)||(34869640-34869696)
chr7 (5-61)||(37618165-37618221)
[»] chr4 (5 HSPs)
chr4 (4-61)||(37042670-37042727)
chr4 (4-61)||(44719367-44719424)
chr4 (11-61)||(31961272-31961322)
chr4 (5-50)||(6958255-6958300)
chr4 (5-61)||(35555656-35555712)
[»] chr2 (5 HSPs)
chr2 (4-61)||(8197547-8197604)
chr2 (4-61)||(8202307-8202364)
chr2 (5-61)||(28960217-28960273)
chr2 (11-61)||(12489808-12489858)
chr2 (5-58)||(12470906-12470959)
[»] chr5 (7 HSPs)
chr5 (14-56)||(5847886-5847928)
chr5 (12-61)||(9121084-9121133)
chr5 (4-61)||(12576866-12576923)
chr5 (5-61)||(3442877-3442933)
chr5 (5-61)||(10639522-10639578)
chr5 (5-61)||(28411896-28411952)
chr5 (5-61)||(28976865-28976921)
[»] chr6 (1 HSPs)
chr6 (5-61)||(28085596-28085652)
[»] chr3 (3 HSPs)
chr3 (5-61)||(31566167-31566223)
chr3 (5-61)||(47233602-47233658)
chr3 (5-61)||(51447723-51447779)
[»] chr1 (3 HSPs)
chr1 (5-61)||(15437134-15437190)
chr1 (138-185)||(31129178-31129223)
chr1 (5-61)||(43028814-43028870)


Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 3 - 432
Target Start/End: Complemental strand, 36829147 - 36828703
Alignment:
Q  3 cttatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgtattagtcttagacgattaatccataataataagtgaaatta 102  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36829147 cttatggtgtcgtttgattcatgtagccgaccatattttgtgagataaagcttggttgtattagtcttagacgattaatccataataataagtgaaatta 36829048  T
Q  103 gttgtcttagttgatttacttatgaagaagttagttagttagttacctaataacttacactacaagttaagtgtgtatatagaattgcccaacttgagtt 202  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36829047 gttgtcttagttgatttacttatgaagaatttagttagttagttacctaataacttacactacaagttaagcgtgtatatagaattgcccaacttgagtt 36828948  T
Q  203 atttactattta--------------ttaatgcaattcttgtggtgtctgatctaaataatccaaagataaaaaggtgagtgaagtatcgttaacatgaa 288  Q
    ||||||||||||              |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  36828947 atttactatttattaaagggttattattaatgcaattcttgtggtgtctgatctaaataatctagagataaaaaggtgagtgaagtatcgttaacatgaa 36828848  T
Q  289 gaatgcctcatcccctcaaacatgactctggtttgtttgattctccat-tatactctgcgtgaactgtgagttctgtcttagagtctactcttacacatt 387  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36828847 gaatgcctcatcccctcaaacatgactctggcttgtttggttctccatcaatactctgcgtgaactgtgagttctgtcttagagtctactcttacacaat 36828748  T
Q  388 tatacctagcttttcggttttgagtaaaaccagttctcctgtctt 432  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  36828747 tatacctagcttttcgattttgagtaaaaccagttctcctgtctt 36828703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 12611716 - 12611773
Alignment:
Q  4 ttatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||||||||||||||| ||||||||||| |  | || ||||||||| ||||||||||    
T  12611716 ttatggtgtcgtttgatccatgtagccgatcccaattagtgggataaggcttggttgt 12611773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 30812878 - 30812849
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgacc 34  Q
    ||||||||||||||||||||||||||||||    
T  30812878 tatggtgtcgtttgattcatgtagccgacc 30812849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 37808260 - 37808215
Alignment:
Q  4 ttatggtgtcgtttgattcatgtagccgaccatattttgtgggata 49  Q
    ||||||||| |||||||||||||||||||||  |||| ||||||||    
T  37808260 ttatggtgtagtttgattcatgtagccgaccccatttagtgggata 37808215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 39702173 - 39702230
Alignment:
Q  4 ttatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||||| || ||||||  ||||||||||||| |||| |||||||||| |||||||||    
T  39702173 ttatggtatcatttgatctatgtagccgaccacatttagtgggataaaacttggttgt 39702230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 7531706 - 7531650
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    |||||||||||||||||||||||||||| |  | || || |||||| ||||||||||    
T  7531706 tatggtgtcgtttgattcatgtagccgaactcacttagtaggataaggcttggttgt 7531650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 16921451 - 16921495
Alignment:
Q  17 tgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    |||| ||||||||||||| || || ||||||||||||||||||||    
T  16921451 tgatccatgtagccgaccgtacttagtgggataaagcttggttgt 16921495  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 2799162 - 2799208
Alignment:
Q  135 agttagttagttacctaataacttacactacaagttaagtgtgtata 181  Q
    |||||||||||||||||||||||| || |||||||||||||| ||||    
T  2799162 agttagttagttacctaataacttgcattacaagttaagtgtatata 2799208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 31840450 - 31840506
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||| |||||||||||||||||||| ||| || || ||||||||| ||||||||||    
T  31840450 tatggcgtcgtttgattcatgtagcctaccctacttagtgggataaggcttggttgt 31840506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 24777191 - 24777237
Alignment:
Q  15 tttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    |||||||||||||||||| | || || ||||||||||||||||||||    
T  24777191 tttgattcatgtagccgatcctacttagtgggataaagcttggttgt 24777237  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 34745967 - 34746023
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||| || |||||||||||||||||||||  | || ||||||||| ||||||||||    
T  34745967 tatggcgttgtttgattcatgtagccgaccccacttagtgggataaggcttggttgt 34746023  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 34869640 - 34869696
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||| ||| |||||| ||||||||||||| || || ||||||||| ||||||||||    
T  34869640 tatggcgtcatttgatccatgtagccgaccctaattagtgggataaggcttggttgt 34869696  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 37618165 - 37618221
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||||||| |||||| |||||||||||||  | || ||||||||| ||||||||||    
T  37618165 tatggtgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgt 37618221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 37042727 - 37042670
Alignment:
Q  4 ttatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||||||||||||||| |||||||||||||  | || ||||||||| ||||||||||    
T  37042727 ttatggtgtcgtttgatccatgtagccgacccgacttagtgggataaggcttggttgt 37042670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 44719424 - 44719367
Alignment:
Q  4 ttatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||||||||||||||| ||||||||||||| || || |||||||||  |||||||||    
T  44719424 ttatggtgtcgtttgatccatgtagccgaccctacttagtgggataagacttggttgt 44719367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 31961322 - 31961272
Alignment:
Q  11 gtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||||||||||||||||||||||  | || ||||||||| ||||||||||    
T  31961322 gtcgtttgattcatgtagccgacctcacttagtgggataaggcttggttgt 31961272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 6958300 - 6958255
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataa 50  Q
    ||||| |||||||||||||||||||||||| || || |||||||||    
T  6958300 tatggcgtcgtttgattcatgtagccgaccctacttagtgggataa 6958255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 35555712 - 35555656
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||| |||||||||||||||||||||||   |||| |||||| || ||||||||||    
T  35555712 tatggcgtcgtttgattcatgtagccgactccatttagtgggacaaggcttggttgt 35555656  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 8197604 - 8197547
Alignment:
Q  4 ttatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    |||||| |||||||||| ||||||||||||| || || ||||||||| ||||||||||    
T  8197604 ttatggcgtcgtttgatccatgtagccgaccctacttagtgggataatgcttggttgt 8197547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 8202364 - 8202307
Alignment:
Q  4 ttatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    |||||| |||||||||| ||||||||||||| || || ||||||||| ||||||||||    
T  8202364 ttatggcgtcgtttgatccatgtagccgaccctacttagtgggataatgcttggttgt 8202307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 28960273 - 28960217
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    |||||||||||||||||||||||| ||||   |||| ||||||||| ||||||||||    
T  28960273 tatggtgtcgtttgattcatgtagtcgactccatttagtgggataaggcttggttgt 28960217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 12489858 - 12489808
Alignment:
Q  11 gtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||||||||||||||||||||||  | || ||||||||| ||||||||||    
T  12489858 gtcgtttgattcatgtagccgaccccacttagtgggataaggcttggttgt 12489808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 12470959 - 12470906
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggt 58  Q
    ||||| |||||||| |||||||||||||||  |||| ||||||||| |||||||    
T  12470959 tatggcgtcgtttgcttcatgtagccgaccccatttagtgggataaggcttggt 12470906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 5847928 - 5847886
Alignment:
Q  14 gtttgattcatgtagccgaccatattttgtgggataaagcttg 56  Q
    ||||||||||||||| ||| | |||||||||||||||||||||    
T  5847928 gtttgattcatgtagtcgatcctattttgtgggataaagcttg 5847886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 9121133 - 9121084
Alignment:
Q  12 tcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    |||||||||||||||||||||||  | || ||||||||| ||||||||||    
T  9121133 tcgtttgattcatgtagccgacctcacttagtgggataaggcttggttgt 9121084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 12576923 - 12576866
Alignment:
Q  4 ttatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    |||||||||| ||| || |||||||||||||  | || ||||||||||||||||||||    
T  12576923 ttatggtgtcattttatacatgtagccgaccccaattagtgggataaagcttggttgt 12576866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 3442933 - 3442877
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||| ||||||||||||||||||||||||  | || |||| |||| ||||||||||    
T  3442933 tatggcgtcgtttgattcatgtagccgaccccacttagtggcataaggcttggttgt 3442877  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 10639522 - 10639578
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||| ||| |||||| |||||||||||||  | |||||||||||| ||||||||||    
T  10639522 tatggcgtcatttgatccatgtagccgaccccactttgtgggataaggcttggttgt 10639578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 28411896 - 28411952
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||| || |||||||||||||||||||||  | || ||||||||| ||||||||||    
T  28411896 tatggcgttgtttgattcatgtagccgaccccacttagtgggataaggcttggttgt 28411952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 28976921 - 28976865
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||| ||| ||||||||||||||||||||  | || ||||||||| ||||||||||    
T  28976921 tatggcgtcatttgattcatgtagccgaccccacttagtgggataaggcttggttgt 28976865  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 28085596 - 28085652
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||||||| |||||| |||||||||||||  | || ||||||||| ||||||||||    
T  28085596 tatggtgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgt 28085652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 31566223 - 31566167
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||||||| |||||| |||||||||||||  | || ||||||||| ||||||||||    
T  31566223 tatggtgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgt 31566167  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 47233658 - 47233602
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||| ||| ||||||||||||||||||||  | || ||||||||| ||||||||||    
T  47233658 tatggcgtcatttgattcatgtagccgaccccagttagtgggataaggcttggttgt 47233602  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 51447779 - 51447723
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    ||||| ||| ||||||||||||||||| ||  |||| ||||||||| ||||||||||    
T  51447779 tatggcgtcatttgattcatgtagccggccccatttagtgggataaggcttggttgt 51447723  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 15437190 - 15437134
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    |||||||||||||||||||||||||| |||  |  | ||||||||| ||||||||||    
T  15437190 tatggtgtcgtttgattcatgtagccaaccccacatagtgggataaggcttggttgt 15437134  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 31129223 - 31129178
Alignment:
Q  138 tagttagttacctaataacttacactacaagttaagtgtgtatataga 185  Q
    ||||||||||||||||| ||||| ||||||||||  ||||||||||||    
T  31129223 tagttagttacctaataccttactctacaagtta--tgtgtatataga 31129178  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 43028870 - 43028814
Alignment:
Q  5 tatggtgtcgtttgattcatgtagccgaccatattttgtgggataaagcttggttgt 61  Q
    |||||||||||||||||||||||  |||||  | || ||||||||| ||||||||||    
T  43028870 tatggtgtcgtttgattcatgtaagcgaccccacttagtgggataaggcttggttgt 43028814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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