View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15699_high_1 (Length: 600)
Name: NF15699_high_1
Description: NF15699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15699_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 238 - 583
Target Start/End: Complemental strand, 985688 - 985343
Alignment:
| Q |
238 |
taatttagttgtacaaatgtagttggttggttagcaaatttctagtgttataaaagcatagtttagcataaaactttggtgatttttactttcatttatc |
337 |
Q |
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| T |
985688 |
taatttagttgtacaaatgtagttggttggttagcaaatttctagtgttataaaagcatagtttagcataaaactttggtgatttttactttcatttatc |
985589 |
T |
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| Q |
338 |
gnnnnnnnagttacttttggcgattagtgtaacatttttccatggtcaatgtatctaccaagttcactccttcatcttcccctcttatcacctcccattt |
437 |
Q |
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| T |
985588 |
gttttgttagttacttttggcgattagtgtaacatttttccatggtcaatgtatctaccaagttcactccttcatcttaccctcttatcacctcccattt |
985489 |
T |
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| Q |
438 |
cctcaaaacttgtttgctttagtgctcacaacaatgattcccaatctcctttgccaaggtatgtcttagaatttctctattgtctcacatcatcaccctt |
537 |
Q |
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| T |
985488 |
cctcaaaacttgtatgctttagtgctcacaaccatgattcccaatctcctttgccaaggtatgtcttagaatttctctattgtctcacatcatcaccctt |
985389 |
T |
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| Q |
538 |
tcattttatattatacactagattttgaaattatggttgcactcac |
583 |
Q |
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| T |
985388 |
tcattttatattatacactagattttgaaattatggttgcactcac |
985343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 30 - 262
Target Start/End: Complemental strand, 985924 - 985692
Alignment:
| Q |
30 |
catgtgaaagaaggaatgcatgtcatctaaagcatatatgcaatttccctaccataatttatgtcgtggaccagttttgatgaatttagatgacatagta |
129 |
Q |
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| T |
985924 |
catgtgaaagaaggaatgcatatcatctaaagcatatatgcaatttccctaccataatttatgtcgtggaccatttttgatgaatttagatgacatagta |
985825 |
T |
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| Q |
130 |
attggcccacctagcttatagaagttattattcaaacttaccgtctgttctatgacataatggttgcaggttgcttgcatatgtacctgcattacatatc |
229 |
Q |
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| T |
985824 |
attggcccacctagcttatagaagttattattcaaacttaccgtctgttctatgacataatggttgcaggttgcttgcatatgtacctgcattacatatc |
985725 |
T |
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| Q |
230 |
aggcaacttaatttagttgtacaaatgtagttg |
262 |
Q |
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| T |
985724 |
aggcaacttaatttagttgtacaaatgtagttg |
985692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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