View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15699_high_13 (Length: 296)
Name: NF15699_high_13
Description: NF15699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15699_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 36829390 - 36829126
Alignment:
| Q |
21 |
tgtagaacggtgcatttttcagaatcttttaacttcttgtgttattaatatcaactttctgctgaatcttttatgtgaaaaatacttaaaagttgaccaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36829390 |
tgtagaacggtgcatttttcagaatcttttaacttcttgtgttattaatatcaactttctgctgaatcttttatatgaaaaatacttaaaagttgaccaa |
36829291 |
T |
|
| Q |
121 |
agcatccataggatccgctcagccctacatttatattgagaatcagtattttctaggctcctcctatataaagttttaacaatttacaatgtaaatacaa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36829290 |
agcatccataggatccgctcagccctacatttatattgagaatccgtattttctaggctcctcctatataaagttttaacaatttacaatgtaaatacat |
36829191 |
T |
|
| Q |
221 |
aattaaaatatttacaataagtttcatgtacttttgatagaaccttatggtgtcgtttgattcat |
285 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36829190 |
aattaaaatatttacaatatgtttcatgtacttttgatagaatcttatggtgtcgtttgattcat |
36829126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 36840552 - 36840485
Alignment:
| Q |
62 |
ttattaatatcaactttctgctgaatcttttatgtgaaaaatacttaaaagttgaccaaagcatccat |
129 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
36840552 |
ttattattatcaactttctgcagaatcttttatgtggaaaaaacttaaaagttgaccaaagcatccat |
36840485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 36840462 - 36840411
Alignment:
| Q |
132 |
gatccgctcagccctacatttatattgagaatcagtattttctaggctcctc |
183 |
Q |
| |
|
|||| ||||||| || | |||||||||||||||||||||||||||||||||| |
|
|
| T |
36840462 |
gatcggctcagcgcttcgtttatattgagaatcagtattttctaggctcctc |
36840411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University