View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15699_high_14 (Length: 293)
Name: NF15699_high_14
Description: NF15699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15699_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 35298636 - 35298572
Alignment:
| Q |
6 |
tagaggagtagcaaagggtgtgcattaacaaaagaaaaaggctagataacgcaaattccaatctc |
70 |
Q |
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| T |
35298636 |
tagaggagtaataaagggtgtgcattaacaaaagaaaaaggctagataacgcaaattccaatctc |
35298572 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 26418208 - 26418132
Alignment:
| Q |
107 |
tggatgcaatttttaattggttgatttttatttcgggatgttttcgttataatttccttggttgtgtttaacaatgct |
184 |
Q |
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| T |
26418208 |
tggaagcaatttttaattggttggtttttacatcgggatgctttcgatataa-ttccttggttgtgtttagcaatgct |
26418132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 29481034 - 29480961
Alignment:
| Q |
109 |
gatgcaatttttaattggttgatttttatttcgggatgttttcgttataatttccttggttgtgtttaacaatg |
182 |
Q |
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| T |
29481034 |
gatgcaatttttaattggctaatttctagttggcgatgcattcgttataatttccttcgctgtgtttagcaatg |
29480961 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 40848382 - 40848454
Alignment:
| Q |
110 |
atgcaatttttaattggttgatttttatttcgggatgttttcgttataatttccttggttgtgtttaacaatg |
182 |
Q |
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| T |
40848382 |
atgcaatttttaattggttggtttacagttcacgatgctttcgttataatttccttcgttgtgtttagcaatg |
40848454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 30856236 - 30856308
Alignment:
| Q |
112 |
gcaatttttaattggttgatttttatttcgggatgttttcgttataatttccttggttgtgtttaacaatgct |
184 |
Q |
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||||||||||||||||||||||||||| | |||| ||||| |||||||||||| | | |||||| ||||||| |
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| T |
30856236 |
gcaatttttaattggttgatttttattccaggatactttcgctataatttccttcgctatgtttagcaatgct |
30856308 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 2346981 - 2346913
Alignment:
| Q |
116 |
tttttaattggttgatttttatttcgggatgttttcgttataatttccttggttgtgtttaacaatgct |
184 |
Q |
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| T |
2346981 |
tttttaattggttggtttttatgtcgggatgatttcgctataacacccttcgctgtgtttagcaatgct |
2346913 |
T |
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