View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15699_high_2 (Length: 581)
Name: NF15699_high_2
Description: NF15699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15699_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 34960719 - 34961278
Alignment:
| Q |
1 |
acaaaatgagtcattccgtgacattagttaagttagtactttgtagtttgtagagaggaacactaacatctaaataaattgatagtaacctctaacgtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34960719 |
acaaaatgagtcattccgtgacattagttaagttagtactttgtagtttgtagagaggaacactaacatctaaataaattgatagtaacctctaacgtaa |
34960818 |
T |
|
| Q |
101 |
ctatcgatcacaggcaaagaaggaacatgacacgataaggcaccgatgannnnnnngaacaaaatagaagctacagtcacacactcattcatccagtcac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34960819 |
ctatcgatcacaggcaaagaaggaacatgacacgataaggcaccgatgatttttttgaacaaaatagaagctacagtcacacactcattcatccagtcac |
34960918 |
T |
|
| Q |
201 |
caccaatcaaccattccacattggacacaaatctcccacaacagataagaggaccccactctctcccatccaacaatagccatatcctctcaactccacc |
300 |
Q |
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| T |
34960919 |
caccaatcaaccattccacattggacacaaatctcccacaatagataagaggaccccactctctcccatccaacaatagccatatcctctcaactccacc |
34961018 |
T |
|
| Q |
301 |
ataccatcctactctctcacaaaatttctcccatccactccatcagaaaatcttcatcaacgacaatcaattcatcaatgacacctagctcgtgtgtttg |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34961019 |
ataccatcctactctctcacaaaatttctcccatccactccatcagaaaatcttcatcaacgacaatcaattcatcaatgacacctagctcatgtgtttg |
34961118 |
T |
|
| Q |
401 |
cgaaacacgcaattatacccaacacacaagatnnnnnnncgagtaaacaatctttttgatctttgaatgtgtgagacactcgatatatttctaaatgtat |
500 |
Q |
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| T |
34961119 |
cgaaacacgcaattatacccaacacacaagataaaaaaacgagtaaacgatctttttgatctttgaatgtctgaggcactcgatatatttctaaatgtat |
34961218 |
T |
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| Q |
501 |
cggaattgtaaagtctcttttaattttggaaattcaaattcagtccaatgaccgactaag |
560 |
Q |
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| T |
34961219 |
tggaattgtaaagtttcttttaattttgaaaattcaaattcagtccaaagaccgactaag |
34961278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 299 - 432
Target Start/End: Original strand, 34961452 - 34961583
Alignment:
| Q |
299 |
ccataccatcctactctctcacaaaatttctcccatccactccatcagaaaatcttcatcaacgacaatcaattcatcaatgacacctagctcgtgtgtt |
398 |
Q |
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|||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||| |||||||||||| |||||| ||||||| ||| ||||| |
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| T |
34961452 |
ccataccatcctactctctcacca--tctctcccatccactccttcagaaaatcttcattaacgacaatcaagccatcaaccacacctaactcacgtgtt |
34961549 |
T |
|
| Q |
399 |
tgcgaaacacgcaattatacccaacacacaagat |
432 |
Q |
| |
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|| ||| |||| |||||||||||||||||||||| |
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| T |
34961550 |
tgtgaagcacgtaattatacccaacacacaagat |
34961583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 489
Target Start/End: Original strand, 34961597 - 34961642
Alignment:
| Q |
444 |
taaacaatctttttgatctttgaatgtgtgagacactcgatatatt |
489 |
Q |
| |
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|||||||||||||| |||||||||||| ||||||| | |||||||| |
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| T |
34961597 |
taaacaatcttttttatctttgaatgtctgagacattggatatatt |
34961642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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