View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15699_high_3 (Length: 458)
Name: NF15699_high_3
Description: NF15699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15699_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 23279657 - 23279241
Alignment:
| Q |
16 |
attataacactgttacgtataggaatttgaacataccgctatttgccgcaatcttcaattacagcactaggttgtatttcttgtataagcctcagggctc |
115 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23279657 |
attataaaactgttacgtataggaatttgaacataccgctatttgccgcaatcttcaattacagcactaggttgtatttcttgtataagcctcagggctc |
23279558 |
T |
|
| Q |
116 |
tagataattgctaattttggatctttcagtcaagcatatgctactaatgttctattttcttttaccttgaattttgtttagtaactttcattatatggtt |
215 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23279557 |
tagataattgctaattttggatctttcagtccagcatatgctactaatgttctattttcttttacctcgaattttgtttagtaactttcattatatggtt |
23279458 |
T |
|
| Q |
216 |
aatttgatttccagaaacaaagatatgacggatttttgcccaatgtgccatagtctgctgatgttggaacctgctacggatgatggtggcacaaaattct |
315 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23279457 |
aatttgatttccagaaacaaagatatgacgaatttttgcccaatgtgccatagtctgctgatgttggaacctgctacggatgatggtggtacaaaattct |
23279358 |
T |
|
| Q |
316 |
actgtaatgtttgtccttatgttcaccgcatacaggaaccaatagaggagaatgttttgctggtcaagaaccctcccacatctgcnnnnnnntttacccc |
415 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23279357 |
actgtaatgtttgtccttatgttcgccgcatacaggaatcaatagaggagaatgttttgctggtcaagaaccctcccacatctgcaaaaaaatttacccc |
23279258 |
T |
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| Q |
416 |
tggtggatggtgctttt |
432 |
Q |
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||||||||||||||||| |
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| T |
23279257 |
tggtggatggtgctttt |
23279241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 23400675 - 23400783
Alignment:
| Q |
16 |
attataacactgttacgtataggaatttgaacataccgctatttgccgcaatcttcaattacagcactaggttgtatttcttgtataagcctcagggctc |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23400675 |
attataacactgttacgtataggaatttgaacataccgctattttccgcaatcttcaattacagcaccaggttgtatttcttgtataagcctcagggctc |
23400774 |
T |
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| Q |
116 |
tagataatt |
124 |
Q |
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||||||||| |
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| T |
23400775 |
tagataatt |
23400783 |
T |
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