View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15699_low_11 (Length: 310)

Name: NF15699_low_11
Description: NF15699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15699_low_11
NF15699_low_11
[»] chr2 (1 HSPs)
chr2 (10-284)||(30617710-30617984)
[»] chr1 (2 HSPs)
chr1 (48-284)||(29254912-29255148)
chr1 (48-284)||(13264052-13264279)
[»] chr4 (1 HSPs)
chr4 (52-284)||(32527102-32527334)
[»] chr6 (1 HSPs)
chr6 (92-129)||(14125401-14125438)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 30617984 - 30617710
Alignment:
Q  10 attatactgctttcaacgtccaatccctaattatattgcttcgaatattatcataaggttgcattacaaattctacaaattatataaattatattgcttt 109  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30617984 attatattgctttcaacatccaatccctaattatattgcttcgaatattatcataaggttgcattacaaattctacaaattatataaattatattccttt 30617885  T
Q  110 caacttcgattgcaaagcaccactggttatccaaaaaagaaagaaatattaatacataaaaccaatcgcagagaatgggaacatgtagagacgaggttgt 209  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||| |    
T  30617884 caacttcgattgcaaagcaccactggttatccaaaaaagaaataaatattaatacataaaaccaatgacagagaatgggaacatgtagagacgaggttat 30617785  T
Q  210 ggagtggaaggtaaacctaccattctaactcctctcatgatcaatatccaatcaaaagaaatatgcatggtatat 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30617784 ggagtggaaggtaaacctaccattctaactcctctcatgatcaatatccaatcaaaagaaatatggatggtatat 30617710  T

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Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 48 - 284
Target Start/End: Original strand, 29254912 - 29255148
Alignment:
Q  48 cttcgaatattatcataaggttgcattacaaattctacaaattatataaattatattgctttcaacttcgattgcaaagcaccactggttatccaaaaaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29254912 cttcgaatattatcataaggttgcattacaaattctacaaattatataaattatattgctttcaacttcgattgcaaagcaccactggttatccaaaaaa 29255011  T
Q  148 gaaagaaatattaatacataaaaccaatcgcagagaatgggaacatgtagagacgaggttgtggagtggaaggtaaacctaccattctaactcctctcat 247  Q
    ||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  29255012 gaaagaaatattaatacataaaaccaatgacagagaatgggagcatgtagagacgaggctgtggagtggaaggtaaacctaccattctaactcctgtcat 29255111  T
Q  248 gatcaatatccaatcaaaagaaatatgcatggtatat 284  Q
    ||||||||||||||||||||||||||| |||||||||    
T  29255112 gatcaatatccaatcaaaagaaatatggatggtatat 29255148  T

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Target: chr1; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 48 - 284
Target Start/End: Complemental strand, 13264279 - 13264052
Alignment:
Q  48 cttcgaatattatcataaggttgcattacaaattctacaaattatataaattatattgctttcaacttcgattgcaaagcaccactggttatccaaaaaa 147  Q
    ||||||||||||||||||||||||||||||||||         ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13264279 cttcgaatattatcataaggttgcattacaaatt---------atataaattattttgctttcaacttcgattgcaaagcaccactggttatccaaaaaa 13264189  T
Q  148 gaaagaaatattaatacataaaaccaatcgcagagaatgggaacatgtagagacgaggttgtggagtggaaggtaaacctaccattctaactcctctcat 247  Q
    |||||||||||||||| ||||||||||| | ||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  13264188 gaaagaaatattaatatataaaaccaatggtagagaatgggagcatgtagagacgaggctgtggaatggaaggtaaacctaccattctaactcctgtcat 13264089  T
Q  248 gatcaatatccaatcaaaagaaatatgcatggtatat 284  Q
    |||||||||||||||||||||||||||  ||||||||    
T  13264088 gatcaatatccaatcaaaagaaatatggttggtatat 13264052  T

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Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 52 - 284
Target Start/End: Complemental strand, 32527334 - 32527102
Alignment:
Q  52 gaatattatcataaggttgcattacaaattctacaaattatataaattatattgctttcaacttcgattgcaaagcaccactggttatccaaaaaagaaa 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32527334 gaatattatcataaggttgcattacaaattctacaaattatataaattatattgctttcaacttcgattgcaaagcaccactggttatccaaaaaagaaa 32527235  T
Q  152 gaaatattaatacataaaaccaatcgcagagaatgggaacatgtagagacgaggttgtggagtggaaggtaaacctaccattctaactcctctcatgatc 251  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||     
T  32527234 gaaatattaatacataaaaccaatggcagagaatgggagcatgtagagacgaggctgtggagtggaaggtaaacctaccattctaactcttgtcatgatt 32527135  T
Q  252 aatatccaatcaaaagaaatatgcatggtatat 284  Q
    ||||||||||||||||||||||| |||||||||    
T  32527134 aatatccaatcaaaagaaatatggatggtatat 32527102  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 14125401 - 14125438
Alignment:
Q  92 tataaattatattgctttcaacttcgattgcaaagcac 129  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  14125401 tataaattacattgctttcaacatcgattgcaaagcac 14125438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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