View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15699_low_19 (Length: 227)
Name: NF15699_low_19
Description: NF15699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15699_low_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 20746722 - 20746502
Alignment:
| Q |
3 |
aaatacaataaatatttaatcattgtgactttgattaattagattcagtacatttatg-ttatgagttgatttcaaaaat-aagtatttgacttatattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
20746722 |
aaatacaataaatatttaatcattgtgactttgattaa---gattcaggacatttatggttatgagttgatttaaaaaatgaagtatttgacttatattt |
20746626 |
T |
|
| Q |
101 |
tctttctgagaactcctacttatagagaaaggcaactaagtagctcccacttcagagacacatgactacaatcttgacaattactttactgagctagatc |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
20746625 |
tctttctgagaactcctacttatacagaaaggcaactaagtagctctcacttcagagacacatgattacaatcatgacaattactttactgagctagatc |
20746526 |
T |
|
| Q |
201 |
tcagtagatcatgtagtgtggatt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
20746525 |
tcagtagatcatgtagtgtggatt |
20746502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 20737628 - 20737523
Alignment:
| Q |
49 |
agtacatttatg-ttatgagttgatttcaaaaat-aagtatttgacttatattttctttctgagaactcctacttatagagaaaggcaactaagtagctc |
146 |
Q |
| |
|
|||||||||||| |||||||| |||| |||||| |||||| |||||| | || ||| ||| |||||||| |||||||||||| |||||||||| ||| |
|
|
| T |
20737628 |
agtacatttatgcttatgagtaaattttaaaaatgaagtatctgactttttttctctccatgataactcctatttatagagaaagacaactaagtaactc |
20737529 |
T |
|
| Q |
147 |
ccactt |
152 |
Q |
| |
|
|||||| |
|
|
| T |
20737528 |
ccactt |
20737523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University