View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15699_low_20 (Length: 223)

Name: NF15699_low_20
Description: NF15699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15699_low_20
NF15699_low_20
[»] chr6 (3 HSPs)
chr6 (1-56)||(2971632-2971687)
chr6 (69-109)||(2963361-2963401)
chr6 (71-109)||(2971737-2971775)
[»] chr7 (2 HSPs)
chr7 (195-223)||(29292975-29293003)
chr7 (195-223)||(29293319-29293347)
[»] chr4 (2 HSPs)
chr4 (195-223)||(26207413-26207441)
chr4 (195-223)||(26207719-26207747)
[»] chr3 (1 HSPs)
chr3 (195-223)||(47666308-47666336)
[»] chr2 (2 HSPs)
chr2 (195-223)||(41790543-41790571)
chr2 (195-223)||(41790885-41790913)
[»] chr1 (1 HSPs)
chr1 (195-223)||(44911078-44911106)


Alignment Details
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2971632 - 2971687
Alignment:
Q  1 ctataaaagaattagaaatattgattggcatgttcttggaataggtcaacagtgct 56  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  2971632 ctataaaagaattagaaatattgattggcatgttcttgtaataggtcaatagtgct 2971687  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 2963361 - 2963401
Alignment:
Q  69 agtactgcatttattaccctttacccaagtggtcttgagac 109  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2963361 agtactgcatttattaccctttacccaagtggtcttgagac 2963401  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 2971737 - 2971775
Alignment:
Q  71 tactgcatttattaccctttacccaagtggtcttgagac 109  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2971737 tactgcatttattaccctttacccaagtggtcttgagac 2971775  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 29292975 - 29293003
Alignment:
Q  195 ccattgtttaaaacgagcgattttgcccc 223  Q
    |||||||||||||||||||||||||||||    
T  29292975 ccattgtttaaaacgagcgattttgcccc 29293003  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 29293347 - 29293319
Alignment:
Q  195 ccattgtttaaaacgagcgattttgcccc 223  Q
    |||||||||||||||||||||||||||||    
T  29293347 ccattgtttaaaacgagcgattttgcccc 29293319  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 26207413 - 26207441
Alignment:
Q  195 ccattgtttaaaacgagcgattttgcccc 223  Q
    |||||||||||||||||||||||||||||    
T  26207413 ccattgtttaaaacgagcgattttgcccc 26207441  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 26207747 - 26207719
Alignment:
Q  195 ccattgtttaaaacgagcgattttgcccc 223  Q
    |||||||||||||||||||||||||||||    
T  26207747 ccattgtttaaaacgagcgattttgcccc 26207719  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 47666336 - 47666308
Alignment:
Q  195 ccattgtttaaaacgagcgattttgcccc 223  Q
    |||||||||||||||||||||||||||||    
T  47666336 ccattgtttaaaacgagcgattttgcccc 47666308  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 41790543 - 41790571
Alignment:
Q  195 ccattgtttaaaacgagcgattttgcccc 223  Q
    |||||||||||||||||||||||||||||    
T  41790543 ccattgtttaaaacgagcgattttgcccc 41790571  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 41790913 - 41790885
Alignment:
Q  195 ccattgtttaaaacgagcgattttgcccc 223  Q
    |||||||||||||||||||||||||||||    
T  41790913 ccattgtttaaaacgagcgattttgcccc 41790885  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 44911078 - 44911106
Alignment:
Q  195 ccattgtttaaaacgagcgattttgcccc 223  Q
    |||||||||||||||||||||||||||||    
T  44911078 ccattgtttaaaacgagcgattttgcccc 44911106  T

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