View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15699_low_4 (Length: 435)

Name: NF15699_low_4
Description: NF15699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15699_low_4
NF15699_low_4
[»] chr6 (40 HSPs)
chr6 (1-435)||(26635339-26635774)
chr6 (1-435)||(26741305-26741740)
chr6 (211-435)||(26959025-26959250)
chr6 (222-430)||(26974923-26975131)
chr6 (146-430)||(25071451-25071738)
chr6 (182-431)||(27665224-27665470)
chr6 (130-435)||(26949440-26949745)
chr6 (180-428)||(26811335-26811586)
chr6 (163-410)||(27214226-27214476)
chr6 (163-410)||(27234752-27235002)
chr6 (232-416)||(26848541-26848725)
chr6 (4-109)||(26974713-26974818)
chr6 (2-98)||(26958839-26958934)
chr6 (270-410)||(27593148-27593288)
chr6 (246-410)||(27698622-27698786)
chr6 (246-410)||(27724973-27725137)
chr6 (246-410)||(28781034-28781198)
chr6 (246-410)||(28786173-28786337)
chr6 (246-410)||(28792294-28792458)
chr6 (246-389)||(27229127-27229270)
chr6 (285-383)||(26617260-26617358)
chr6 (285-383)||(26723188-26723286)
chr6 (270-410)||(27678865-27679005)
chr6 (253-410)||(31284190-31284347)
chr6 (246-410)||(27611130-27611294)
chr6 (246-410)||(27718507-27718671)
chr6 (234-410)||(28234447-28234623)
chr6 (246-400)||(26802337-26802491)
chr6 (246-376)||(27604867-27604997)
chr6 (270-410)||(27677742-27677882)
chr6 (246-372)||(26622871-26622997)
chr6 (246-372)||(26728849-26728975)
chr6 (246-376)||(27531359-27531489)
chr6 (281-410)||(27338193-27338322)
chr6 (281-410)||(27398933-27399062)
chr6 (366-430)||(24715597-24715661)
chr6 (329-376)||(29826005-29826052)
chr6 (328-410)||(28149915-28149996)
chr6 (234-340)||(28098567-28098673)
chr6 (282-376)||(29697489-29697583)
[»] chr2 (1 HSPs)
chr2 (233-433)||(17993789-17993989)
[»] scaffold1254 (1 HSPs)
scaffold1254 (246-410)||(45-209)
[»] scaffold0419 (1 HSPs)
scaffold0419 (246-410)||(7420-7584)
[»] scaffold0349 (2 HSPs)
scaffold0349 (246-410)||(3550-3714)
scaffold0349 (246-410)||(14483-14647)
[»] scaffold0277 (2 HSPs)
scaffold0277 (246-410)||(13760-13924)
scaffold0277 (246-410)||(4799-4963)
[»] scaffold0038 (1 HSPs)
scaffold0038 (234-410)||(34608-34784)
[»] chr4 (5 HSPs)
chr4 (237-430)||(5091062-5091255)
chr4 (258-344)||(18679748-18679834)
chr4 (258-344)||(18699581-18699667)
chr4 (297-344)||(18655658-18655705)
chr4 (258-344)||(18724266-18724352)
[»] chr5 (1 HSPs)
chr5 (282-376)||(17790163-17790257)
[»] scaffold0012 (1 HSPs)
scaffold0012 (303-376)||(241843-241916)


Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 26635339 - 26635774
Alignment:
Q  1 tacaataaatgtgtgactggtccacacacatatagtaaa-ctgtgaaggatgtttcgctattaatgttaaaaatggacactcataaataactcttactgc 99  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26635339 tacaataaatgtgtgactggtccacacgcatatagtaaaactgtgaaggatgtttcactattaatgttaaaaatggacactcataaataactcttactgc 26635438  T
Q  100 aaactcatttcctgcttttggtttttacagatcctgatactaaatcaacactcctaaccgaaatactctcgctaccatttactctcatggctatgcaatt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  26635439 aaactcatttcctgcttttggtttttacagatcctgatactaaatcaacactcctaactgaaatactatcgctgccatttactctcatggctatgcaatt 26635538  T
Q  200 accatattcttcctcctctttcgtctctaatgatttcacctacgacgtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26635539 accatattcttcctcctctttcgtctctaatgatttcacctacgacgtgttcattagtttcaggggcaccgacactcaattcggtttcaccggtaacctc 26635638  T
Q  300 tataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaag 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26635639 tataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggatgaaatcacaccttcgctcctcaagagcattgaag 26635738  T
Q  400 agtcgaggattgccattatcgttttctctaaggaat 435  Q
    ||||||||||||||||||||||||||||||||||||    
T  26635739 agtcgaggattgccattatcgttttctctaaggaat 26635774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 26741305 - 26741740
Alignment:
Q  1 tacaataaatgtgtgactggtccacacacatatagtaaa-ctgtgaaggatgtttcgctattaatgttaaaaatggacactcataaataactcttactgc 99  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26741305 tacaataaatgtgtgactggtccacacgcatatagtaaaactgtgaaggatgtttcactattaatgttaaaaatggacactcataaataactcttactgc 26741404  T
Q  100 aaactcatttcctgcttttggtttttacagatcctgatactaaatcaacactcctaaccgaaatactctcgctaccatttactctcatggctatgcaatt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  26741405 aaactcatttcctgcttttggtttttacagatcctgatactaaatcaacactcctaactgaaatactatcgctgccatttactctcatggctatgcaatt 26741504  T
Q  200 accatattcttcctcctctttcgtctctaatgatttcacctacgacgtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26741505 accatattcttcctcctctttcgtctctaatgatttcacctacgacgtgttcattagtttcaggggcaccgacactcaattcggtttcaccggtaacctc 26741604  T
Q  300 tataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaag 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26741605 tataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggatgaaatcacaccttcgctcctcaagagcattgaag 26741704  T
Q  400 agtcgaggattgccattatcgttttctctaaggaat 435  Q
    ||||||||||||||||||||||||||||||||||||    
T  26741705 agtcgaggattgccattatcgttttctctaaggaat 26741740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 211 - 435
Target Start/End: Original strand, 26959025 - 26959250
Alignment:
Q  211 cctcctctttcgtctctaatgatttcacctacgacgtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctct 310  Q
    |||||||||  || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26959025 cctcctcttctgtttctaatgatttcacctacgacgtcttcattagtttcaggggcaccgacactcgattcagtttcaccggtaacctctataaagctct 26959124  T
Q  311 ttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggacgaaatcacaccttcgctcctc-aagagcattgaagagtcgaggat 409  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||||    
T  26959125 ttctgacaaaggaatcgacaccttcattgatgacaaagagcttaaaaaaggggatgaaatcacaccttcgcttctcaaagagcattgaagactcgaggat 26959224  T
Q  410 tgccattatcgttttctctaaggaat 435  Q
    ||||||||||||||||||||||||||    
T  26959225 tgccattatcgttttctctaaggaat 26959250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 222 - 430
Target Start/End: Original strand, 26974923 - 26975131
Alignment:
Q  222 gtctctaatgatttcacctacgacgtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaag 321  Q
    |||||||| ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26974923 gtctctaaagatttcacctatgacgtgttcattagtttcagaggtaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaag 26975022  T
Q  322 gaatcaacaccttcattgatgacaaggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggattgccattatcgt 421  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  26975023 gaatcaacatcttcattgatgacaaggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagactcgaggattaccattatcgt 26975122  T
Q  422 tttctctaa 430  Q
     ||||||||    
T  26975123 cttctctaa 26975131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 146 - 430
Target Start/End: Original strand, 25071451 - 25071738
Alignment:
Q  146 aacactcctaaccgaaatactctcgctaccatttactctcatggctatgcaattaccatattcttcct---cctctttcgtctctaatgatttcacctac 242  Q
    |||||||| |||| || ||  ||| |||||| ||| ||||||||||||||||||||| | ||| ||||   ||||   | ||||||||||||||| |||     
T  25071451 aacactccaaaccaaactatactcactaccacttattctcatggctatgcaattaccttcttcatccttgtcctccaccctctctaatgatttcatctat 25071550  T
Q  243 gacgtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatg 342  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| ||||||| |||||||    
T  25071551 gacgtgttcattagtttcaggggtaccgacactcgattcggttttaccggtaatctttataaagctctttctgacaaaggaatccacacctttattgatg 25071650  T
Q  343 acaaggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggattgccattatcgttttctctaa 430  Q
    |||| |||||||| | ||| |||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||    
T  25071651 acaaagagcttaagagaggtgacgaaatcacaccttcgctccgcaagagcattgaagattcgagaattgccattatcgtcttctctaa 25071738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 182 - 431
Target Start/End: Complemental strand, 27665470 - 27665224
Alignment:
Q  182 tctcatggctatgcaattaccatattcttcctcctctttcgtctctaatgatttcacctacgacgtgttcattagtttcaggggcaccgacactcgattc 281  Q
    |||||||||||||||||||||   | |||||||||| | | ||||| ||||||||| || ||| |||||||||||||||||||| ||||||||||||||     
T  27665470 tctcatggctatgcaattacc---tacttcctcctcctccctctcttatgatttcaacttcgatgtgttcattagtttcaggggtaccgacactcgattt 27665374  T
Q  282 ggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggacgaaatcacaccttcgc 381  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||  ||  || ||||||||||||||||| |    
T  27665373 ggtttcaccggtaacctctataaggctctttctgacaaaggaatccacaccttcattgatgacaaggagcttccaactggtgacgaaatcacaccttcac 27665274  T
Q  382 tcctcaagagcattgaagagtcgaggattgccattatcgttttctctaag 431  Q
    |||  |||||||||||||| |||||||||||||||||  | |||||||||    
T  27665273 tccggaagagcattgaagaatcgaggattgccattattatattctctaag 27665224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 130 - 435
Target Start/End: Original strand, 26949440 - 26949745
Alignment:
Q  130 atcctgatactaaatcaacactcctaaccgaaatactctcgctaccatttactctcatggctatgcaattaccatattcttcctcctctttcgtctctaa 229  Q
    ||||||||| |||  ||||||||| ||   || |||||||||||||||||| ||||||||||||||||| ||  | ||| |||||  ||| | | ||| |    
T  26949440 atcctgatagtaacacaacactccaaatacaattactctcgctaccatttattctcatggctatgcaatcactttcttcctcctctacttccttttctta 26949539  T
Q  230 tgatttcacctacgacgtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaac 329  Q
    |||||||| ||  || ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||       
T  26949540 tgatttcaactttgatgtgttcattagtttcagaggtaccgacactcgattcggtttcaccggtaatctctataaagctctctctgacaagggaatccga 26949639  T
Q  330 accttcattgatgacaaggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggattgccattatcgttttctcta 429  Q
    |||||||||||||| ||||||||| | ||||| ||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||| || ||||    
T  26949640 accttcattgatgataaggagcttcagaaaggtgacgaaatcacaccttcactcctcaagagaattgaagaatcgagaattgccattatcgtcttttcta 26949739  T
Q  430 aggaat 435  Q
    ||||||    
T  26949740 aggaat 26949745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 180 - 428
Target Start/End: Original strand, 26811335 - 26811586
Alignment:
Q  180 actctcatggctatgcaattaccatattcttcctc---ctctttcgtctctaatgatttcacctacgacgtgttcattagtttcaggggcaccgacactc 276  Q
    ||||||||||||||||||||||| | ||| |||||   ||| | | ||||||||||||||| ||| ||||||||||||||||||||||| | ||||||||    
T  26811335 actctcatggctatgcaattaccttcttcctcctcgtcctcctccctctctaatgatttcatctatgacgtgttcattagtttcaggggtatcgacactc 26811434  T
Q  277 gattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggacgaaatcacacc 376  Q
    |||  || ||||||||| | |||||||||||||||| |||||||||||||   |||||||||||||||||||||||| | | ||| ||||||||||||||    
T  26811435 gatctggcttcaccggtcatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacacc 26811534  T
Q  377 ttcgctcctcaagagcattgaagagtcgaggattgccattatcgttttctct 428  Q
    |||||||||||||||||||||| | || |||||||||||||| || ||||||    
T  26811535 ttcgctcctcaagagcattgaacactctaggattgccattattgtattctct 26811586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 163 - 410
Target Start/End: Original strand, 27214226 - 27214476
Alignment:
Q  163 tactctcgctaccatttactctcatggctatgcaattaccatattcttcctcctctttcg---tctctaatgatttcacctacgacgtgttcattagttt 259  Q
    ||||||| ||| ||||| |||||||||||||||||  ||| | |||| | || || | ||   |||||||| |||||| ||| |||||||||||||||||    
T  27214226 tactctcactatcatttcctctcatggctatgcaaccaccttcttctacttcttcctccggcctctctaataatttcagctatgacgtgttcattagttt 27214325  T
Q  260 caggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaa 359  Q
    |||||| ||||||||||||  ||||||||||||||| |||||||||||||||| |||||||||||||   |||||||||||||||||||||||| | | |    
T  27214326 caggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaaggagcttcagaga 27214425  T
Q  360 ggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    || |||||||||||| ||||||||| |||||  |||||||| |||||||||    
T  27214426 ggtgacgaaatcacatcttcgctccacaagaaaattgaagactcgaggatt 27214476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 163 - 410
Target Start/End: Complemental strand, 27235002 - 27234752
Alignment:
Q  163 tactctcgctaccatttactctcatggctatgcaattaccatattcttcctcctctttcg---tctctaatgatttcacctacgacgtgttcattagttt 259  Q
    ||||||| ||| ||||| |||||||||||||||||  ||| | |||| | || || | ||   |||||||| |||||| ||| |||||||||||||||||    
T  27235002 tactctcactatcatttcctctcatggctatgcaaccaccttcttctacttcttcctccggcctctctaataatttcagctatgacgtgttcattagttt 27234903  T
Q  260 caggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaa 359  Q
    |||||| ||||||||||||  ||||||||||||||| |||||||||||||||| |||||||||||||   |||||||||||||||||||||||| | | |    
T  27234902 caggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaaggagcttcagaga 27234803  T
Q  360 ggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    || |||||||||||| ||||||||| |||||  |||||||| |||||||||    
T  27234802 ggtgacgaaatcacatcttcgctccacaagaaaattgaagactcgaggatt 27234752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 232 - 416
Target Start/End: Original strand, 26848541 - 26848725
Alignment:
Q  232 atttcacctacgacgtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacac 331  Q
    |||||| ||| || |||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||||||||||||||||| ||||||   ||    
T  26848541 atttcaactatgatgtgttcattagtttcaggggcaccgacactagattcagtttcactggtaatctctataaagctctttctgacaatggaatccgaac 26848640  T
Q  332 cttcattgatgacaaggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggattgccatt 416  Q
    |||||||||||||||||| ||| | |  || || || |||||||||||||||||||||| ||||||||| ||||||||| |||||    
T  26848641 cttcattgatgacaaggatcttcagagtggtgatgagatcacaccttcgctcctcaagaacattgaagactcgaggatttccatt 26848725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 26974713 - 26974818
Alignment:
Q  4 aataaatgtgtgactggtccacacacatatagtaaactgtgaaggatgtttcgctattaatgttaaaaatggacactcataaataactcttactgcaaac 103  Q
    ||||| ||||||||||||||||||  || ||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  26974713 aataattgtgtgactggtccacacggatgtagtaaaatgtgaaggaagtttcgctactaatgttaaaaatggacactcataaataactcttacttcaaac 26974812  T
Q  104 tcattt 109  Q
    ||||||    
T  26974813 tcattt 26974818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 26958839 - 26958934
Alignment:
Q  2 acaataaatgtgtgactggtccacacacatatagtaaactgtgaaggatgtttcgctattaatgttaaaaatggacactcataaataactcttactg 98  Q
    ||||||| ||||||||||||||||||  ||| |||||| ||||||||| |||| |||| |||||||||||||||||| ||||||||| |||||||||    
T  26958839 acaataattgtgtgactggtccacaccgataaagtaaaatgtgaaggaagttt-gctactaatgttaaaaatggacaatcataaatagctcttactg 26958934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 270 - 410
Target Start/End: Complemental strand, 27593288 - 27593148
Alignment:
Q  270 gacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggacgaaa 369  Q
    |||||||| | |||||||||||| || ||||| || |||||| ||||||| |||||||||||||||||||||||||| |  ||| ||| |||  | ||||    
T  27593288 gacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacaccttcattgatgacaatggtcttcaaagaggaaatgaaa 27593189  T
Q  370 tcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    ||||||| || || ||||||  |||||||||||| ||||||    
T  27593188 tcacaccatcacttctcaaggccattgaagagtctaggatt 27593148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 246 - 410
Target Start/End: Complemental strand, 27698786 - 27698622
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||||| ||||| |||||||| ||||||||   |||||| ||||| || ||||| || |||||| ||||||| |||||| | ||||||||||||||||    
T  27698786 gtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgaca 27698687  T
Q  346 aggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    | || ||| ||| ||| || ||||||||||| || |||||||||  |||||| || || ||||||    
T  27698686 atgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatt 27698622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 246 - 410
Target Start/End: Complemental strand, 27725137 - 27724973
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||| ||||||| |||||||| ||||||||   |||||| ||||| || ||||| || |||||| ||||||| |||||| | ||||||||||||||||    
T  27725137 gtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgaca 27725038  T
Q  346 aggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    | || ||| ||| ||| || ||||||||||| || |||||||||  |||||| || || ||||||    
T  27725037 atgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatt 27724973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 246 - 410
Target Start/End: Original strand, 28781034 - 28781198
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||| | ||||| |||||||| ||||||||   |||||| ||||| || ||||| || |||||| ||||||| |||||||| ||||||||||||||||    
T  28781034 gtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgaca 28781133  T
Q  346 aggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    | || ||| ||| ||| || ||||||||||| || |||||||||  ||| ||||| || ||||||    
T  28781134 atgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatt 28781198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 246 - 410
Target Start/End: Original strand, 28786173 - 28786337
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||| | ||||| |||||||| ||||||||   |||||| ||||| || ||||| || |||||| ||||||| |||||||| ||||||||||||||||    
T  28786173 gtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgaca 28786272  T
Q  346 aggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    | || ||| ||| ||| || ||||||||||| || |||||||||  ||| ||||| || ||||||    
T  28786273 atgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatt 28786337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 246 - 410
Target Start/End: Original strand, 28792294 - 28792458
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||| | ||||| |||||||| ||||||||   |||||| ||||| || ||||| || |||||| ||||||| |||||||| ||||||||||||||||    
T  28792294 gtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgaca 28792393  T
Q  346 aggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    | || ||| ||| ||| || ||||||||||| || |||||||||  ||| ||||| || ||||||    
T  28792394 atgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatt 28792458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 389
Target Start/End: Original strand, 27229127 - 27229270
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||| ||||||| |||||||| ||||||||   |||||| ||||| || ||||| || |||||| ||||||| |||||| | ||||||||||||||||    
T  27229127 gtgttccttagttttaggggcactgacactcggcacggttttaccggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgaca 27229226  T
Q  346 aggagcttaaaaaaggggacgaaatcacaccttcgctcctcaag 389  Q
    | || ||| ||| ||| |||||||||||||| || ||| |||||    
T  27229227 atgatcttcaaagaggagacgaaatcacaccatcactcgtcaag 27229270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 383
Target Start/End: Original strand, 26617260 - 26617358
Alignment:
Q  285 ttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggacgaaatcacaccttcgctc 383  Q
    |||||||| || |||||||||||||||| |||||||||| ||   |||||||||||||||||||||||| | | ||| || ||||||||||||||||||    
T  26617260 ttcaccggcaatctctataaagctctttgtgacaaaggagtccgaaccttcattgatgacaaggagcttcagagaggtgatgaaatcacaccttcgctc 26617358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 383
Target Start/End: Original strand, 26723188 - 26723286
Alignment:
Q  285 ttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggacgaaatcacaccttcgctc 383  Q
    |||||||| || |||||||||||||||| |||||||||| ||   |||||||||||||||||||||||| | | ||| || ||||||||||||||||||    
T  26723188 ttcaccggcaatctctataaagctctttgtgacaaaggagtccgaaccttcattgatgacaaggagcttcagagaggtgatgaaatcacaccttcgctc 26723286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 270 - 410
Target Start/End: Original strand, 27678865 - 27679005
Alignment:
Q  270 gacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggacgaaa 369  Q
    |||||||| | |||||||||||| || ||||| || |||||| ||||||| ||||||||||||||||||||| | || |  ||| ||| ||| || ||||    
T  27678865 gacactcggtacggtttcaccgggaatctctacaaggctcttactgacaagggaatcaacaccttcattgataagaatggtcttcaaagaggagatgaaa 27678964  T
Q  370 tcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    ||||||| || || ||||||  |||||||||||| ||||||    
T  27678965 tcacaccatcacttctcaaggccattgaagagtctaggatt 27679005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 410
Target Start/End: Original strand, 31284190 - 31284347
Alignment:
Q  253 ttagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagct 352  Q
    ||||||||||||| |  |||||||| |  ||||||||||| || ||||| || |||||| ||||||| |||||| |||||||||||||||| |  || ||    
T  31284190 ttagtttcaggggaagtgacactcggtatggtttcaccggcaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatagtgaact 31284289  T
Q  353 taaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    | ||| |||||| ||||||||||| || |||  |||   |||||||||||| ||||||    
T  31284290 tcaaagaggggatgaaatcacaccatcactcgacaatgccattgaagagtctaggatt 31284347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 410
Target Start/End: Complemental strand, 27611294 - 27611130
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||| | ||||| |||||||| ||||||||   |||||| ||||| || ||||| || |||||| ||||||| |||||| | ||||||||||||||||    
T  27611294 gtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgaca 27611195  T
Q  346 aggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    | || |||  || ||| || ||||||||||| || |||||||||  |||||| || || ||||||    
T  27611194 atgatcttccaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatt 27611130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 410
Target Start/End: Complemental strand, 27718671 - 27718507
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||| | ||||| |||||||| ||||||||   | |||| ||||| || ||||| || |||||| ||||||| |||||| | ||||||||||||||||    
T  27718671 gtgttcctcagttttaggggcactgacactcggcacagttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgaca 27718572  T
Q  346 aggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    | || ||| ||| ||| || ||||||||||| || |||||||||  |||||| || || ||||||    
T  27718571 atgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatt 27718507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 410
Target Start/End: Original strand, 28234447 - 28234623
Alignment:
Q  234 ttcacctacgacgtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacacct 333  Q
    |||||||| ||||||||| ||||||| || || |  |||||||| |  ||||| ||||  || ||||||| |||||||| | |||| |||||| ||||||    
T  28234447 ttcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaatccacacct 28234546  T
Q  334 tcattgatgacaaggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    |||||||||||| ||||||| ||  ||| || ||||| ||||| || ||  |||||  |||||||||||| ||||||    
T  28234547 tcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggatt 28234623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 400
Target Start/End: Original strand, 26802337 - 26802491
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||| | ||||| |||||||| |||||||| | |||||| || || || ||||| || ||||||  |||||| |||||| | ||||||||||||||||    
T  26802337 gtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgaca 26802436  T
Q  346 aggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaaga 400  Q
    | || ||| ||| ||| || ||||||||||| || ||| |||||  |||||||||    
T  26802437 atgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaaga 26802491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 376
Target Start/End: Complemental strand, 27604997 - 27604867
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||| ||||||| |||||||| |||||||||| |||||| ||||| || ||||| || |||||| ||||||| |||||  | |||||||||||||| |    
T  27604997 gtgttccttagttttaggggcactgacactcgatacggttttaccggcaatctctacaaggctcttactgacaagggaattcataccttcattgatgaaa 27604898  T
Q  346 aggagcttaaaaaaggggacgaaatcacacc 376  Q
    | || |||  || ||| || |||||||||||    
T  27604897 atgatcttcgaagaggagatgaaatcacacc 27604867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 410
Target Start/End: Complemental strand, 27677882 - 27677742
Alignment:
Q  270 gacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggacgaaa 369  Q
    |||||||| | |||||||||||| || ||||| || ||||||  |||||| |||||| |||||||||||||  |  | || ||| ||| |||||| ||||    
T  27677882 gacactcggtacggtttcaccggcaatctctacaaggctcttgatgacaagggaatccacaccttcattgacaatcatgaacttcaaagaggggatgaaa 27677783  T
Q  370 tcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    ||||||| || || ||||||  |||||||||||| ||||||    
T  27677782 tcacaccatcacttctcaaggccattgaagagtctaggatt 27677742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 372
Target Start/End: Original strand, 26622871 - 26622997
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||| | |||||||| ||||  |||||||| | ||||||||| || || ||||| || |||||| ||||||| |||||| ||||||||||||||||      
T  26622871 gtgttcctaagtttcagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatc 26622970  T
Q  346 aggagcttaaaaaaggggacgaaatca 372  Q
      || ||| ||| ||||||||||||||    
T  26622971 gtgaacttcaaagaggggacgaaatca 26622997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 372
Target Start/End: Original strand, 26728849 - 26728975
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||| | |||||||| ||||  |||||||| | ||||||||| || || ||||| || |||||| ||||||| |||||| ||||||||||||||||      
T  26728849 gtgttcctaagtttcagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatc 26728948  T
Q  346 aggagcttaaaaaaggggacgaaatca 372  Q
      || ||| ||| ||||||||||||||    
T  26728949 gtgaacttcaaagaggggacgaaatca 26728975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 376
Target Start/End: Complemental strand, 27531489 - 27531359
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||| | ||||| |||||| | ||||||||   |||||| ||||| || ||||| || |||||| ||||||| |||||| | ||||||||||||||||    
T  27531489 gtgttcctcagttttaggggcgcggacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatctataccttcattgatgaca 27531390  T
Q  346 aggagcttaaaaaaggggacgaaatcacacc 376  Q
    | || ||| ||| ||| || |||||||||||    
T  27531389 atgatcttcaaagaggagatgaaatcacacc 27531359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 410
Target Start/End: Complemental strand, 27338322 - 27338193
Alignment:
Q  281 cggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggacgaaatcacaccttcg 380  Q
    |||||| ||||| || ||||| || ||||||  |||||| |||||||| ||||||||||||||||| || ||| ||| ||| || |||| |||||| ||     
T  27338322 cggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaaagcacaccatca 27338223  T
Q  381 ctcctcaagagcattgaagagtcgaggatt 410  Q
    ||  |||||  |||||||||||| ||||||    
T  27338222 cttgtcaaggccattgaagagtctaggatt 27338193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 410
Target Start/End: Complemental strand, 27399062 - 27398933
Alignment:
Q  281 cggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggacgaaatcacaccttcg 380  Q
    |||||| ||||| || ||||| || ||||||  |||||| |||||||| ||||||||||||||||| || ||| ||| ||| || |||| |||||| ||     
T  27399062 cggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaaagcacaccatca 27398963  T
Q  381 ctcctcaagagcattgaagagtcgaggatt 410  Q
    ||  |||||  |||||||||||| ||||||    
T  27398962 cttgtcaaggccattgaagagtctaggatt 27398933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 430
Target Start/End: Original strand, 24715597 - 24715661
Alignment:
Q  366 gaaatcacaccttcgctcctcaagagcattgaagagtcgaggattgccattatcgttttctctaa 430  Q
    ||||||||| ||||||||||||||||||| ||||| ||||  ||||||||||| || ||||||||    
T  24715597 gaaatcacatcttcgctcctcaagagcatcgaagactcgaaaattgccattattgtcttctctaa 24715661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 29826005 - 29826052
Alignment:
Q  329 caccttcattgatgacaaggagcttaaaaaaggggacgaaatcacacc 376  Q
    |||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  29826005 caccttcattgatgacaaagagcttcaaagaggggacgaaatcacacc 29826052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 28149915 - 28149996
Alignment:
Q  328 acaccttcattgatgacaaggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    |||||||||||||||| | ||||||| ||  |||||||||||||||||| || || ||||||  |||||||||||| ||||||    
T  28149915 acaccttcattgatgatacggagctttaacgaggggacgaaatcacaccatcact-ctcaaggccattgaagagtccaggatt 28149996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 340
Target Start/End: Complemental strand, 28098673 - 28098567
Alignment:
Q  234 ttcacctacgacgtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacacct 333  Q
    |||||||| ||||||||  ||| ||| ||||||||||||||||| |  ||||| || || || ||||| |||||||||| ||||  |||| ||  |||||    
T  28098673 ttcacctatgacgtgtttcttaattttaggggcaccgacactcggtatggttttactggaaatctctacaaagctctttgtgacggaggagtccgcacct 28098574  T
Q  334 tcattga 340  Q
    |||||||    
T  28098573 tcattga 28098567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 29697583 - 29697489
Alignment:
Q  282 ggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggacgaaatcacacc 376  Q
    |||||||||||| | ||| | |||||||||  |||||||||| |    || ||||| |||| |||||||||||||||||| || |||||||||||    
T  29697583 ggtttcaccggttatctcaagaaagctcttgatgacaaaggagttcgaactttcatggatgccaaggagcttaaaaaaggcgaagaaatcacacc 29697489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 233 - 433
Target Start/End: Complemental strand, 17993989 - 17993789
Alignment:
Q  233 tttcacctacgacgtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacacc 332  Q
    ||||| || ||| |||||||||||||||||||| ||||| |||||||  |||||||||||||| ||||||||||||||||||||||| |||||    |||    
T  17993989 tttcagcttcgatgtgttcattagtttcaggggtaccgatactcgatatggtttcaccggtaatctctataaagctctttctgacaagggaattcgaacc 17993890  T
Q  333 ttcattgatgacaaggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggattgccattatcgttttctctaagg 432  Q
    ||||| |||||||| |||||| | | ||| || ||||||||||| ||||||||||||||||||||||| || || ||||| |||||||| ||||| ||||    
T  17993889 ttcatcgatgacaaagagcttcagagaggtgatgaaatcacaccgtcgctcctcaagagcattgaagactcaagaattgcgattatcgtcttctcaaagg 17993790  T
Q  433 a 433  Q
    |    
T  17993789 a 17993789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 246 - 410
Target Start/End: Complemental strand, 209 - 45
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||| ||||||| |||||||| ||||||||   |||||| ||||| || ||||| || |||||| ||||||| |||||||| ||||||||||||||||    
T  209 gtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgaca 110  T
Q  346 aggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    | || ||| ||| ||| || ||||||||||| || |||||||||  ||| ||||| || ||||||    
T  109 atgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatt 45  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 246 - 410
Target Start/End: Original strand, 7420 - 7584
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||| ||||||| |||||||| ||||||||   |||||| ||||| || ||||| || |||||| ||||||| |||||||| ||||||||||||||||    
T  7420 gtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgaca 7519  T
Q  346 aggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    | || ||| ||| ||| || ||||||||||| || |||||||||  ||| ||||| || ||||||    
T  7520 atgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatt 7584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 246 - 410
Target Start/End: Complemental strand, 3714 - 3550
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||| ||||||| |||||||| ||||||||   |||||| ||||| || ||||| || |||||| ||||||| |||||| | ||||||||||||||||    
T  3714 gtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgaca 3615  T
Q  346 aggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    | || ||| ||| ||| || ||||||||||| || |||||||||  |||||| || || ||||||    
T  3614 atgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatt 3550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 246 - 410
Target Start/End: Complemental strand, 14647 - 14483
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||||| ||||| |||||||| ||||||||   |||||| ||||| || ||||| || |||||| ||||||| |||||| | ||||||||||||||||    
T  14647 gtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgaca 14548  T
Q  346 aggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    | || ||| ||| ||| || ||||||||||| || |||||||||  |||||| || || ||||||    
T  14547 atgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatt 14483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 246 - 410
Target Start/End: Complemental strand, 13924 - 13760
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||| | ||||| |||||||| ||||||||   |||||| ||||| || ||||| || |||||| ||||||| |||||||| ||||||||||||||||    
T  13924 gtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgaca 13825  T
Q  346 aggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    | || ||| ||| ||| || ||||||||||| || |||||||||  ||| ||||| || ||||||    
T  13824 atgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatt 13760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 410
Target Start/End: Complemental strand, 4963 - 4799
Alignment:
Q  246 gtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 345  Q
    |||||| | ||||| |||||||  ||||||||   |||||| ||||| || ||||| || |||||| ||||||| |||||||| ||||||||||||||||    
T  4963 gtgttcctcagttttaggggcattgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgaca 4864  T
Q  346 aggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    | || ||| ||| ||| || ||||||||||| || |||| ||||  |||||| || || ||||||    
T  4863 atgatcttcaaagaggagatgaaatcacaccatccctccgcaaggccattgatgaatctaggatt 4799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 410
Target Start/End: Original strand, 34608 - 34784
Alignment:
Q  234 ttcacctacgacgtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacacct 333  Q
    |||||||| ||||||||| ||||||| || || |  |||||||| |  ||||| ||||  || ||||||| |||||||| | |||| |||||| ||||||    
T  34608 ttcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaatccacacct 34707  T
Q  334 tcattgatgacaaggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggatt 410  Q
    |||||||||||| ||||||| ||  ||| || ||||| ||||| || ||  |||||  |||||||||||| ||||||    
T  34708 tcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggatt 34784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 430
Target Start/End: Complemental strand, 5091255 - 5091062
Alignment:
Q  237 acctacgacgtgttcattagtttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttca 336  Q
    ||||||||||| ||  ||||||| || |||||||||||||| | |||||| || || || |||||| |||||||   || ||| |||||  |||||||||    
T  5091255 acctacgacgtctttcttagttttagaggcaccgacactcgttacggttttactggaaatctctatgaagctctacgtgtcaagggaattcacaccttca 5091156  T
Q  337 ttgatgacaaggagcttaaaaaaggggacgaaatcacaccttcgctcctcaagagcattgaagagtcgaggattgccattatcgttttctctaa 430  Q
    |||||||||  |||||| |   ||| ||| |||| ||||| || || ||||||  |||| |||| || | ||||| ||||||||||||||||||    
T  5091155 ttgatgacagagagcttcagcgaggagaccaaataacaccgtcacttctcaaggccattcaagaatctaagattgtcattatcgttttctctaa 5091062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 344
Target Start/End: Complemental strand, 18679834 - 18679748
Alignment:
Q  258 ttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgac 344  Q
    ||||||||||  ||||||||   |||||| || ||| | ||||| || |||||| |||||||||||||| |||||||||||||||||    
T  18679834 ttcaggggcagtgacactcgtaacggttttactggtcatctctacaaggctcttactgacaaaggaatccacaccttcattgatgac 18679748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 344
Target Start/End: Complemental strand, 18699667 - 18699581
Alignment:
Q  258 ttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgac 344  Q
    ||||||||||| ||||||||   |||||| || ||  | ||||| ||||||||| ||||||| |||||| |||||||||||||||||    
T  18699667 ttcaggggcactgacactcgtgacggttttactggccatctctacaaagctcttactgacaagggaatccacaccttcattgatgac 18699581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 344
Target Start/End: Complemental strand, 18655705 - 18655658
Alignment:
Q  297 ctctataaagctctttctgacaaaggaatcaacaccttcattgatgac 344  Q
    ||||| ||||||||| ||||||| |||||| |||||||||||||||||    
T  18655705 ctctacaaagctcttactgacaagggaatccacaccttcattgatgac 18655658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 344
Target Start/End: Complemental strand, 18724352 - 18724266
Alignment:
Q  258 ttcaggggcaccgacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgac 344  Q
    ||||||||||  ||||||||   |||||| || ||| | ||||| || |||||| ||||||| |||||| |||||||||||||||||    
T  18724352 ttcaggggcagtgacactcgtaacggttttactggtcatctctacaaggctcttactgacaagggaatccacaccttcattgatgac 18724266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 376
Target Start/End: Original strand, 17790163 - 17790257
Alignment:
Q  282 ggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggacgaaatcacacc 376  Q
    ||||| ||||| ||||| ||||||||||||| ||  ||||||||| |||| ||||| |||||| | |||||||  ||||| || |||||||||||    
T  17790163 ggttttaccggaaacctttataaagctctttgtggaaaaggaatcgacactttcatagatgaccaagagcttaggaaaggagaagaaatcacacc 17790257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 376
Target Start/End: Complemental strand, 241916 - 241843
Alignment:
Q  303 aaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggacgaaatcacacc 376  Q
    |||||||||  ||||||||||||    || ||||| |||||||||||||||| |||||| || |||||||||||    
T  241916 aaagctcttgatgacaaaggaattcgaactttcatggatgacaaggagcttagaaaaggtgaagaaatcacacc 241843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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