View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15699_low_6 (Length: 376)
Name: NF15699_low_6
Description: NF15699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15699_low_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 24771928 - 24772285
Alignment:
| Q |
18 |
tatatgatgcatatttttaactgaaattgtgaagtttctatcttcataaatttaaattaaactggaagaatcagttaagaccttgcatcaacagatttgt |
117 |
Q |
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| T |
24771928 |
tatatgatgcatatttttaactgaaattgtgaagtttctatcttcataaatttaaattaaactggaagaatcagttaagaccttgcatcaacagatttgt |
24772027 |
T |
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| Q |
118 |
caagaaacttctgtatttccttagcatcgtttgatattaatgacgttgaaaactgcagaaatcctgattcctcttcaaatgaggcatagagatgctacag |
217 |
Q |
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| T |
24772028 |
caagaaacttctgtatttccttagcatcgtttgatattaatgacattgaaaactgcagaaatcctgattcctcttcaaatgaggcatagagatgctacag |
24772127 |
T |
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| Q |
218 |
acagnnnnnnnncaatgccctcatcaagatagagttcttcgttacataaacagtatatgctattcaatgaatcattgttttggaacattaacatttgatg |
317 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24772128 |
acagaaaaaaaacaatgccctcatcaagatagagttcttcgttacataaacagtatatgctattcaatgaatcattgttttggaacattaacatttgatg |
24772227 |
T |
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| Q |
318 |
ataaacagcattaaaagagatccaattggcctgcctcattcggaaactcacaaaatctt |
376 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24772228 |
ataaacagca-taaaagagatccaattggcctgcctcattcggaaactcacaaaatctt |
24772285 |
T |
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