View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1569_high_11 (Length: 360)
Name: NF1569_high_11
Description: NF1569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1569_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 9e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 9 - 318
Target Start/End: Complemental strand, 41549063 - 41548749
Alignment:
| Q |
9 |
agaagcataggataggtattgcctcttactcttgggccttagcaaagatatagtaatatcttccctagcaatgtgtttgt-atctttgaacaacaagttc |
107 |
Q |
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| T |
41549063 |
agaaacataggataggtattgcctctaactcttaggccttagcaaagatatagtaatatcttccctagcaatgtgtttgtgatctttgaacagcaggttc |
41548964 |
T |
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| Q |
108 |
gaacttcgaaggcttg---gaatcagaagatcgtagaggcttatatgaatcttcctatatttccttgttatatgaatcataagaatgtgctttatttttg |
204 |
Q |
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||| ||| |||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
41548963 |
gaatttccaaggcttgttggaatcagaagatcgcagaggcttatatgaatctttctatatttccttattatatgaatcataagaatgtggtttatttttg |
41548864 |
T |
|
| Q |
205 |
ttgttgacaatatcataaagattgt---nnnnnnnnnnnnnnnnncaactttccacgtttctcttatatttcttgtctaatttcattgacaaaataattc |
301 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41548863 |
ttgttgacaatatcat-aagattgtaaaaaaaaaaaaaaaaaaaaaaactttccacgtttctcttatatttcttgtct-atttcattgacaaaataattc |
41548766 |
T |
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| Q |
302 |
aagtattacaaaataat |
318 |
Q |
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||||||||||||||||| |
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| T |
41548765 |
aagtattacaaaataat |
41548749 |
T |
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