View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1569_high_12 (Length: 317)
Name: NF1569_high_12
Description: NF1569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1569_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 33118216 - 33118288
Alignment:
| Q |
11 |
ttattctccaagattttctctggatttgtgattctctacttatgttcaattttcatgcacaaacgttgttttg |
83 |
Q |
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| T |
33118216 |
ttattctccaagattttctctggatttgtgattctctacttatgttcaattttcatgcacaaacgttgttttg |
33118288 |
T |
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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 33118309 - 33118384
Alignment:
| Q |
76 |
ttgttttgtatcataagtatagaagtataaacaagtacgttttcttaatcgttgnnnnnnncaagacaacaacatg |
151 |
Q |
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| T |
33118309 |
ttgtattgtatcataagtatagaagtataaacaagtacgttttcttaatcgttgaaaaaaacaagacaacaacatg |
33118384 |
T |
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