View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1569_high_17 (Length: 242)
Name: NF1569_high_17
Description: NF1569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1569_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 29904203 - 29904417
Alignment:
| Q |
17 |
caactatttggtggtaatcgcatcttaatttgacagaaaaagaaaaggcatcagttatgcaatatgctgacatgagttatttgatgtgtatgcatatgga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29904203 |
caactatttggtggtaatcgcatcttaatttgacagaaaaagaaaaggcatcagttatgcaatatgctgacatgagttatttgatgtgtatgcatatgga |
29904302 |
T |
|
| Q |
117 |
accggtaatgtagaactgcagatagctgatcaactgacttggggatgccgctgtcactcatatcagaaggaagctgaattgtgatgtacccaacgttatg |
216 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29904303 |
actggtaatgtagaactgcagatagctgattcactgacttggggatgccgctgtcactcatatcagaaggaagctgaattgtgatgcacccaacgttatg |
29904402 |
T |
|
| Q |
217 |
gacttgagttttcat |
231 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29904403 |
gacttgagttttcat |
29904417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 29896657 - 29896758
Alignment:
| Q |
104 |
gtatgcatatggaaccggtaatgtagaactgcagatagctgatcaactgacttggggatgccgctgtcactcatatcagaaggaagctgaattgtgatgt |
203 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
29896657 |
gtatgcttatggaaccagtaatgtaggactgtagatagctgatcaactgacttggggatgccgctgtcactcctatcagaaggaagctgaactgtgatgt |
29896756 |
T |
|
| Q |
204 |
ac |
205 |
Q |
| |
|
|| |
|
|
| T |
29896757 |
ac |
29896758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 29887962 - 29888092
Alignment:
| Q |
17 |
caactatttggtggtaatcgcatcttaatttgacagaaaaagaaaaggcatcagttatgcaatatgctgacatgagttatttgatg-------tgtatgc |
109 |
Q |
| |
|
|||||||||||| |||||| ||||| ||||||||| |||||||| |||| ||||||||||||||| ||| ||||||||||||| |||| || |
|
|
| T |
29887962 |
caactatttggttgtaatcatatcttcatttgacaggaaaagaaatggcaagggttatgcaatatgctaacacgagttatttgatgtgtagcatgtacgc |
29888061 |
T |
|
| Q |
110 |
atatggaaccggtaatgtagaactgcagata |
140 |
Q |
| |
|
||||||||| |||||||||| |||||||||| |
|
|
| T |
29888062 |
atatggaactggtaatgtaggactgcagata |
29888092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 29900424 - 29900492
Alignment:
| Q |
157 |
ggggatgccgctgtcactcatatcagaaggaagctgaattgtgatgtacccaacgttatggacttgagtt |
226 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| ||||| | |||||| | |||| || |||||||||||| |
|
|
| T |
29900424 |
ggggatgccactgttactcatatcagaaggaaactgaactctgatgt-cacaaccttgtggacttgagtt |
29900492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 4366021 - 4365944
Alignment:
| Q |
154 |
cttggggatgccgctgtcactcatatcagaaggaagctgaattgtgatgtacccaacgttatggacttgagttttcat |
231 |
Q |
| |
|
|||||||||||| || |||||||||| |||||||| ||||| | |||||||| |||| || ||||||||||||||||| |
|
|
| T |
4366021 |
cttggggatgccactatcactcatataagaaggaatctgaactctgatgtacacaaccttgtggacttgagttttcat |
4365944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University