View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1569_high_20 (Length: 237)

Name: NF1569_high_20
Description: NF1569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1569_high_20
NF1569_high_20
[»] chr7 (5 HSPs)
chr7 (1-170)||(24733459-24733628)
chr7 (162-222)||(24745435-24745495)
chr7 (63-106)||(42562108-42562151)
chr7 (163-224)||(24776599-24776658)
chr7 (163-224)||(24781657-24781718)
[»] chr4 (3 HSPs)
chr4 (35-147)||(16431015-16431127)
chr4 (37-94)||(49382682-49382739)
chr4 (52-91)||(31160500-31160539)
[»] chr6 (1 HSPs)
chr6 (37-106)||(21952551-21952620)
[»] chr2 (1 HSPs)
chr2 (37-106)||(8070960-8071029)
[»] chr8 (1 HSPs)
chr8 (53-91)||(32229936-32229974)


Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 24733459 - 24733628
Alignment:
Q  1 ttaaaattgacttcaagagtcgtttaattaacattattttttgaacaaaagcaaacttatgccatttcattgataatcaaagagtacaagtcagagggta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24733459 ttaaaattgacttcaagagtcgtttaattaacattattttttgaacaaaagcaaacttatgccatttcattgataatcaaagagtacaagtcagagggta 24733558  T
Q  101 catcatgaaagataaaggggatatgatgatataaggaacctctagcttataatatcttatgttttctata 170  Q
    |||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||    
T  24733559 catcatgaaagataaaggggctaggatgagataaggaaactctagcttataatatcttatgttttctata 24733628  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 24745435 - 24745495
Alignment:
Q  162 ttttctataattaagacttctttatatttcaaggccctatcttaatactcttaatcacctt 222  Q
    ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24745435 ttttctataacaaagacttctttatatttcaaggccctatcataatactcttaatcacctt 24745495  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 42562151 - 42562108
Alignment:
Q  63 catttcattgataatcaaagagtacaagtcagagggtacatcat 106  Q
    ||||| ||| ||||||||||||||||||| ||||||||||||||    
T  42562151 cattttattaataatcaaagagtacaagtaagagggtacatcat 42562108  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 24776658 - 24776599
Alignment:
Q  163 tttctataattaagacttctttatatttcaaggccctatcttaatactcttaatcaccttta 224  Q
    ||||||||| |||||||||||||||||| ||||  ||||||| ||||| | |||||||||||    
T  24776658 tttctataactaagacttctttatattttaagg--ctatcttcatactttcaatcaccttta 24776599  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 24781718 - 24781657
Alignment:
Q  163 tttctataattaagacttctttatatttcaaggccctatcttaatactcttaatcaccttta 224  Q
    ||||||||| ||| |||||||||||||| ||||| |||||||  |||| | |||||||||||    
T  24781718 tttctataactaaaacttctttatattttaaggctctatctttgtactttcaatcaccttta 24781657  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 16431127 - 16431015
Alignment:
Q  35 tattttttgaacaaaagcaaacttatgccatttcattgataatcaaagagtacaagtcagagggtacatcatgaaagataaaggggatatgatgatataa 134  Q
    |||||||| | ||||| |||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| || ||||| ||||    
T  16431127 tatttttttagcaaaaacaaatttatgccatttcattgataatcaaggagtacaagtcagagggtatatcatgaaaaataaaggggctaggatgagataa 16431028  T
Q  135 ggaacctctagct 147  Q
    |||||||| ||||    
T  16431027 ggaacctcgagct 16431015  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 49382739 - 49382682
Alignment:
Q  37 ttttttgaacaaaagcaaacttatgccatttcattgataatcaaagagtacaagtcag 94  Q
    |||||| | ||||||||| |||||||||||||||| ||||| |||||||||| |||||    
T  49382739 tttttttagcaaaagcaagcttatgccatttcattaataattaaagagtacatgtcag 49382682  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 91
Target Start/End: Complemental strand, 31160539 - 31160500
Alignment:
Q  52 caaacttatgccatttcattgataatcaaagagtacaagt 91  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  31160539 caaacttaagccatttcattaataatcaaagagtacaagt 31160500  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 21952620 - 21952551
Alignment:
Q  37 ttttttgaacaaaagcaaacttatgccatttcattgataatcaaagagtacaagtcagagggtacatcat 106  Q
    |||||||| |||| ||||||||| ||||||||||| || || ||||||||||||| |  |||||||||||    
T  21952620 ttttttgagcaaaggcaaacttaagccatttcattaatgattaaagagtacaagtaatcgggtacatcat 21952551  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 8070960 - 8071029
Alignment:
Q  37 ttttttgaacaaaagcaaacttatgccatttcattgataatcaaagagtacaagtcagagggtacatcat 106  Q
    |||||||| |||| ||||||||| ||||||||||| || || ||||||||||||| |  |||||||||||    
T  8070960 ttttttgagcaaaggcaaacttaggccatttcattaatgattaaagagtacaagtaatcgggtacatcat 8071029  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 32229936 - 32229974
Alignment:
Q  53 aaacttatgccatttcattgataatcaaagagtacaagt 91  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  32229936 aaacttaagccatttcattaataatcaaagagtacaagt 32229974  T

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