View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1569_high_21 (Length: 235)
Name: NF1569_high_21
Description: NF1569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1569_high_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 51 - 203
Target Start/End: Complemental strand, 2605445 - 2605293
Alignment:
| Q |
51 |
gcttacagctgcataaaaccaccatccatatgttcaagagatttcgaaatgaaacatcagttttgagctcttttgctttgtcaactttacaaccaggaca |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2605445 |
gcttacagctgcataaaaccaccatccatatgttcaagagatttcgaaatgaaacatcagttttgagctcttttgctttgtcaactttacaaccaggaca |
2605346 |
T |
|
| Q |
151 |
attctcatagtactttttcttcaacaatgtctctccaacatttccatcttcca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2605345 |
attctcatagtactttttcttcaacaatgtctctccaacatttccatcttcca |
2605293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2605642 - 2605592
Alignment:
| Q |
1 |
gttaatagcttcaatgtgctttatcttgtgaaactataatataagggattg |
51 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2605642 |
gttaatagcttcaatatgctttatcttgtgaaactataatataagggattg |
2605592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 39160265 - 39160175
Alignment:
| Q |
89 |
agatttcgaaatgaaacatcagttttgagctcttttgctttgtcaactttacaaccaggacaattctcatagtactttttcttcaacaatg |
179 |
Q |
| |
|
|||||||||| ||||||||| ||| |||||||| |||| ||||| ||||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
39160265 |
agatttcgaagtgaaacatctgttccaagctctttggcttgatcaaccttacaaccagggcagttctcataatactttttcttcaacaatg |
39160175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 26371688 - 26371837
Alignment:
| Q |
51 |
gcttacagctgcataaaaccaccatccatatgttcaagagatttcgaaatgaaacatcagttttgagctcttttgctttgtcaactttacaaccaggaca |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26371688 |
gcttacagctgcataaaaccaccatccatatgttcaagagatttcgaaatgaaacatcagttttgagctcttttgctttgtcaactttacaaccaggaca |
26371787 |
T |
|
| Q |
151 |
attctcatagtactttttcttcaacaatgtctctccaacatttccatctt |
200 |
Q |
| |
|
||||||||| || | ||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
26371788 |
attctcataatattgttttttcaacaatgtctctccaatatttccatctt |
26371837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University