View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1569_high_7 (Length: 402)
Name: NF1569_high_7
Description: NF1569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1569_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 148 - 390
Target Start/End: Complemental strand, 971443 - 971201
Alignment:
| Q |
148 |
tctggcgtggttggaattaagcttgatatggaaaaagcatatgatagagtggaatgggatttcctagaaagcactcttctcactatggactttcctatta |
247 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
971443 |
tctggtgtggttggaattaagcttgatatggaaaaagcatatcatagagtggaatgggatttcctagaaagcactcttctcactatgggcttccctatta |
971344 |
T |
|
| Q |
248 |
aaattgttaaaactataatgttgtgtgtcagaagtgtatctttttccattcttataaatgaatccccatctactatgtttaaacctaaaagggaaattag |
347 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
971343 |
aaattgttaaaactataatgctgtgtgtcagaagtgtgtctttttccattcttataaatggatccccatctactatgtttaaacctaaaaggggaattag |
971244 |
T |
|
| Q |
348 |
acaaggagatcctctgcccccttatcttttcataatctgtgct |
390 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
971243 |
acaaggagatcctctctccccttatcttttcataatttgtgct |
971201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 971598 - 971468
Alignment:
| Q |
1 |
tcattacaaagccaattgcaaatagaatcaaaaaagtcctaccctctattattagttcacaacaaagtacatttttaccaaacgggcttatttctgataa |
100 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||| ||| |||||| |||||||||| ||||||| ||| |||||||||||||| ||||||||||||||| |
|
|
| T |
971598 |
tcattataaagacaattgcaaatagaatcaaaaaggtcataccctttattattagtccacaacagagtgcatttttaccaaacatgcttatttctgataa |
971499 |
T |
|
| Q |
101 |
caccattatagcttatgaagcctttcatttt |
131 |
Q |
| |
|
||||||| |||||||||||| |||||||||| |
|
|
| T |
971498 |
caccattctagcttatgaagtctttcatttt |
971468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 157 - 362
Target Start/End: Complemental strand, 43136452 - 43136247
Alignment:
| Q |
157 |
gttggaattaagcttgatatggaaaaagcatatgatagagtggaatgggatttcctagaaagcactcttctcactatggactttcctattaaaattgtta |
256 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| |||||||| |||||||| ||||| ||||| |||| |||| ||||||||||| |||| | |
|
|
| T |
43136452 |
gttggaattaagcttgatctggaaaaggcatatgacagagtggagtgggattttttagaatcaactctcttcaccatgggttttcctattaatcttgtca |
43136353 |
T |
|
| Q |
257 |
aaactataatgttgtgtgtcagaagtgtatctttttccattcttataaatgaatccccatctactatgtttaaacctaaaagggaaattagacaaggaga |
356 |
Q |
| |
|
| ||||| || | |||||||||||||| |||||||| ||||| || |||| ||| | ||||||| ||||||||||| || | ||||||||||||||| |
|
|
| T |
43136352 |
atactatcgtgctttgtgtcagaagtgtctctttttctattctaattaatggatctcattctactacttttaaacctaagagaggaattagacaaggaga |
43136253 |
T |
|
| Q |
357 |
tcctct |
362 |
Q |
| |
|
||||| |
|
|
| T |
43136252 |
ccctct |
43136247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University