View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1569_low_1 (Length: 873)
Name: NF1569_low_1
Description: NF1569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1569_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 132 - 487
Target Start/End: Original strand, 30766885 - 30767240
Alignment:
| Q |
132 |
gacttccgaccgacctaaccattaaaaatataatcgtattagcatatccaatctaattcaaaccacggtaacaaagttgaaaaattatataaaaaataac |
231 |
Q |
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| T |
30766885 |
gacttccgaccgacctaaccattacaaatataatcgtattagcatatccaatctaatgcaaaccacggtaacaaagttgaaaaattatataaaaaataac |
30766984 |
T |
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| Q |
232 |
caaaactgaacatatcaacttttttcgttggattgtaaaataaaaaaccttatgctgttctaatattggagaaaaatattctaaagcttactatattcta |
331 |
Q |
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| T |
30766985 |
caaaactgaacatatcaacttttttcgttggattgtaaaataaaaaaccttattcttttctaatattggagaaaaatattctaaatcttactatattcta |
30767084 |
T |
|
| Q |
332 |
ttttttctgaagcatgattcgccatggaccgacatggtataataacttatggttttcacttctccagttatcaaatgaactgtgttattatcagcattca |
431 |
Q |
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| T |
30767085 |
ttttttctgaagcatgattcaccatggaccgacatggtataataacttatggttttcacttcaccagttatcaaatgaactgtgttattatcagcattca |
30767184 |
T |
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| Q |
432 |
tcaaacagtaaggactataatccaagaattagatacattcatacatatgtatgcag |
487 |
Q |
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| T |
30767185 |
tcaaacagtaaggactataatccaagaattagatacattcatacgtatgtatgcag |
30767240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 564 - 857
Target Start/End: Original strand, 30767317 - 30767614
Alignment:
| Q |
564 |
aagaatgtgtccaatgtccattaatcttgatagagaatgatccatccat-taataagatgcatgaaagaaatttaaaaaggaacaaggagtgggagaata |
662 |
Q |
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| T |
30767317 |
aagaatgtgtccaatgtccattaatcttgatagagaatgatccatccatataataagatgcatgaaagaaatttaaaaaggaacaaggagtgggagaata |
30767416 |
T |
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| Q |
663 |
---attttgctgagttttattcatttgttccataaagctaaagatatataaaagattacaactttatgctaatattatcagtggaataatacctgataga |
759 |
Q |
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| T |
30767417 |
ataattttgctgagttttattcatttgttccataaagctaaagatatataaaagattacaactttatgctaatattatcagtggaataatacctgataga |
30767516 |
T |
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| Q |
760 |
aaactttgctcagttgtgattaggagaagaagaaggtctattagaagaaactctatgaccctcttctccaccttgaactgtatcaggaatgcagaaac |
857 |
Q |
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| T |
30767517 |
aaactttgctcagttgtgattaggagaagaagaaggtctattagaagaaactctatgaccctcttctccaccttgaactgtatcaggaatgcagaaac |
30767614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 30766730 - 30766846
Alignment:
| Q |
14 |
cagagacaaatctaacaaaccactaaacatattttatcataagttcacaatgccaaaatgcatagaaatgtcgatcatattttttagtagatagacgaaa |
113 |
Q |
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| T |
30766730 |
cagagacaaatctaacaaaccactaaacatattttatcataagttcacaatgccaaaatgcaaagaaatgtcaatccaattttttagtagatagacgaaa |
30766829 |
T |
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| Q |
114 |
tgtcaatttatcattga |
130 |
Q |
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| T |
30766830 |
tatcaatttaccattga |
30766846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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